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| *Note: These bugs are found while running the Buckner40 data set.<<BR>> ''see also: Buckner40NotesCombined'' | Note: These bugs are found while running the Buckner40 data set.<<BR>> ''see also: Buckner40Notes'' ||<tablewidth="903px" tableheight="327px"style="font-weight: bold; text-align: center;">Bug ||<style="font-weight: bold; text-align: center;">Example ||<style="font-weight: bold; text-align: center;">Fixed? || ||There's a difference between the orig surf and white surf after wm edits<<BR>> --usually the orig surf is better || || || ||White surf does weird indentations even when wm voxels are present (white matter damage?)<<BR>> --again orig surf is better here || || || ||Surfaces between temporal lobe and the cerebral cortex are usually crazy (random wm voxels) || || || ||Still some problems with calcarine area - aseg is correct yet the surfaces aren't ||073_dev || || ||Pial surf isn't correct at midline<<BR>> (not incorrect but not pretty to look at) ||073_dev || || ||Sometimes the dura is taken as wm and white surf is pulled outward, after deleting the dura from wm.mgz, the white surf still doesn't adjust - the orig surf, however, does. ||092 at 174 131 143, 097 at 117 147 153, 102 at 114 122 162 || || ||When I click on the snapshot button, I can save a snapshot as either tiff<<BR>>or rgb. When I right or left click on the snapshot button I can only save rgb. If I<<BR>>try to save a .tif in the rgb window, tkmedit crashes with this error:<<BR>><<BR>>*** glibc detected *** tkmedit.bin: free(): invalid next size (normal):<<BR>>0x000000002370d610 ***<<BR>>======= Backtrace: =========<<BR>>/lib64/libc.so.6[0x354c27230f]<<BR>>/lib64/libc.so.6(cfree+0x4b)[0x354c27276b]<<BR>>/lib64/libc.so.6(fclose+0x14b)[0x354c260d5b]<<BR>>tkmedit.bin(cos+0xa8b)[0x41542b]<<BR>>tkmedit.bin(atan+0x2101)[0x4167c1]<<BR>> || || || ||Watershed method to correct skull strip errors - there seems to be no in between for fine tuning the amount of brain I want present. There's either part of the brain missing (skull strip failure) or the entire skull is present. ||Tried with buckner 145_wstest || || |
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| ||<tablestyle="width: 903px; height: 327px;": style="font-weight: bold;">Bug||<: style="font-weight: bold;">Example||<: style="font-weight: bold;">Fixed?|| || || || || || || || || || || || || || || || || || || || || || || || || || || || || || || || || || || || || || || || || || || || || |
*Examples are found here<<BR>> /autofs/cluster/freesurfer/test/subjects/x86_64/buckner_data/group_study_fs5.0.0_from_scratch == Feature Requests == ||Requests ||Granted? || ||Quit prompt when pressing Ctrl-q when view window is highlighted in tkmedit. || || ||Have a tool that can highlight and add wm voxels at the same time? || || |
Bug List from Stable 5.0.0
Note: These bugs are found while running the Buckner40 data set.
see also: Buckner40Notes
Bug |
Example |
Fixed? |
There's a difference between the orig surf and white surf after wm edits |
|
|
White surf does weird indentations even when wm voxels are present (white matter damage?) |
|
|
Surfaces between temporal lobe and the cerebral cortex are usually crazy (random wm voxels) |
|
|
Still some problems with calcarine area - aseg is correct yet the surfaces aren't |
073_dev |
|
Pial surf isn't correct at midline |
073_dev |
|
Sometimes the dura is taken as wm and white surf is pulled outward, after deleting the dura from wm.mgz, the white surf still doesn't adjust - the orig surf, however, does. |
092 at 174 131 143, 097 at 117 147 153, 102 at 114 122 162 |
|
When I click on the snapshot button, I can save a snapshot as either tiff |
|
|
Watershed method to correct skull strip errors - there seems to be no in between for fine tuning the amount of brain I want present. There's either part of the brain missing (skull strip failure) or the entire skull is present. |
Tried with buckner 145_wstest |
|
*Examples are found here
/autofs/cluster/freesurfer/test/subjects/x86_64/buckner_data/group_study_fs5.0.0_from_scratch
Feature Requests
Requests |
Granted? |
Quit prompt when pressing Ctrl-q when view window is highlighted in tkmedit. |
|
Have a tool that can highlight and add wm voxels at the same time? |
|