Bug

Example

Fixed?

There's a difference between the orig surf and white surf after wm edits
--usually the orig surf is better

White surf does weird indentations even when wm voxels are present (white matter damage?)
--again orig surf is better here

Surfaces between temporal lobe and the cerebral cortex are usually crazy (random wm voxels)

Still some problems with calcarine area - aseg is correct yet the surfaces aren't

073_dev

Pial surf isn't correct at midline
(not incorrect but not pretty to look at)

073_dev

Sometimes the dura is taken as wm and white surf is pulled outward, after deleting the dura from wm.mgz, the white surf still doesn't adjust - the orig surf, however, does.

092 at 174 131 143, 097 at 117 147 153, 102 at 114 122 162