| Deletions are marked like this. | Additions are marked like this. |
| Line 4: | Line 4: |
| In general, feel free to go through any of the slides and tutorials that we'll be covering during the course. They can be found here: | In general, feel free to go through any of the slides and tutorials that we'll be covering during the course. They can be found here: <<BR>> |
| Line 9: | Line 9: |
|
UNIX If you are unfamiliar with UNIX, it may help to do this online tutorial: |
UNIX<<BR>> If you are unfamiliar with UNIX, it may help to do this online tutorial: <<BR>> |
| Line 13: | Line 13: |
|
Other good UNIX references are: http://www.fmrib.ox.ac.uk/fslcourse/unix_intro/ |
Other good UNIX references are: <<BR>> http://www.fmrib.ox.ac.uk/fslcourse/unix_intro/ <<BR>> |
| Line 17: | Line 17: |
|
SCRIPTING Scripting will not be covered during the course, but following are some good references: http://www.linuxjournal.com/article/1299 |
SCRIPTING<<BR>> Scripting will not be covered during the course, but following are some good references:<<BR>> http://www.linuxjournal.com/article/1299 <<BR>> |
| Line 22: | Line 22: |
|
MR If you are unfamiliar with MR physics, you can read up on it here: |
MR<<BR>> If you are unfamiliar with MR physics, you can read up on it here: <<BR>> |
| Line 28: | Line 28: |
|
FREESURFER You can read up on the techniques and applications of FreeSurfer here (found under the References section): |
FREESURFER<<BR>> You can read up on the techniques and applications of FreeSurfer here (found under the References section): <<BR>> |
| Line 32: | Line 32: |
| You can download FreeSurfer and process your own data. Instructions on installation are here: | You can download FreeSurfer and process your own data. Instructions on installation are here: <<BR>> |
| Line 35: | Line 35: |
| Instructions for processing your data are at the bottom of this page: | Instructions for processing your data are at the bottom of this page: <<BR>> |
How to Prepare for the FreeSurfer Course
COURSE MATERIALS
In general, feel free to go through any of the slides and tutorials that we'll be covering during the course. They can be found here:
http://surfer.nmr.mgh.harvard.edu/fswiki/FsTutorial
Not all of the slides are up or updated yet, but feel free to look at what is there.
UNIX
If you are unfamiliar with UNIX, it may help to do this online tutorial:
http://www.ee.surrey.ac.uk/Teaching/Unix/
Other good UNIX references are:
http://www.fmrib.ox.ac.uk/fslcourse/unix_intro/
http://docstore.mik.ua/orelly/linux/lnut/index.htm
SCRIPTING
Scripting will not be covered during the course, but following are some good references:
http://www.linuxjournal.com/article/1299
https://supportweb.cs.bham.ac.uk/documentation/tutorials/docsystem/build/tutorials/unixscripting/unixscripting.html
MR
If you are unfamiliar with MR physics, you can read up on it here:
http://www.cis.rit.edu/htbooks/mri/
There will be an optional lunch talk that will go over the basics of MR physics.
FREESURFER
You can read up on the techniques and applications of FreeSurfer here (found under the References section):
https://surfer.nmr.mgh.harvard.edu/fswiki/
You can download FreeSurfer and process your own data. Instructions on installation are here:
https://surfer.nmr.mgh.harvard.edu/fswiki/DownloadAndInstall
Instructions for processing your data are at the bottom of this page:
https://surfer.nmr.mgh.harvard.edu/fswiki/TestingFreeSurfer