|
Size: 418
Comment: Added MINC link.
|
Size: 1484
Comment:
|
| Deletions are marked like this. | Additions are marked like this. |
| Line 1: | Line 1: |
| #pragma section-numbers on | [[FreeSurferWiki|top]] |
| Line 3: | Line 3: |
| [[Navigation(children)]] | = FreeSurfer File Formats = FreeSurfer creates its own file formats for storing and manipulating volumetric, surface and transform data, including mgh, mgz, gca, bshort, bfloat, COR, surface, curv, w, annot, patch, gcs, dat, xfm, m3d and lta. These FreeSurfer native formats are summarized below, along with some closely-related external image formats. |
| Line 5: | Line 6: |
| = Index = [[TableOfContents]] |
== 1.0 FreeSurfer Native Formats == '''1.1 Volume''' <<BR>> |
| Line 8: | Line 9: |
| = FreeSurfer Native Formats = == Volume == * mgh * gca |
* [[FsTutorial/CorFormat|COR]] <<BR>> * [[FsTutorial/BshortFormat|bshort]] <<BR>> * [[FsTutorial/BfloatFormat|bfloat]] <<BR>> * [[FsTutorial/MghFormat|mgh/mgz]] <<BR>> * [[FsTutorial/GcaFormat|gca]] <<BR>> |
| Line 13: | Line 15: |
| * bfloat * bshort * COR |
'''1.2 Surface''' <<BR>> |
| Line 17: | Line 17: |
| == Surface == | * [[http://wideman-one.com/gw/brain/fs/surfacefileformats.htm|FreeSurfer Surface File Formats]] !FreeSurfer formats for the surfaces themselves, and also for vertex-wise data in 'curv' and 'W' formats. * Surface registration template "tif" content and format: TemplateTifImageFiles |
| Line 19: | Line 20: |
| * surface (ascii/binary) * curv * w * annot * patch * gcs |
'''1.3 Transform''' <<BR>> |
| Line 26: | Line 22: |
| == Transforms == * dat |
* [[RegisterDat|register.dat]] |
| Line 30: | Line 25: |
| * lta | * [[FsTutorial/LtaFormat|lta]] '''1.4 Labels, Color Lookup Tables and Annotation Files''' * [[LabelsClutsAnnotationFiles]] |
| Line 33: | Line 32: |
| = FreeSurfer Dependency Formats = == Volume == * ["MINC"] * Analyze * ["DICOM"] |
== 2.0 External Formats == * [[FsTutorial/MincFormat|MINC]] <<BR>> * [[FsTutorial/AnalyzeFormat|Analyze]] <<BR>> * [[FsTutorial/DicomFormat|DICOM]] <<BR>> * See also: [[http://airto.bmap.ucla.edu/BMCweb/HowTo/FileFormats.html|MRI Image file formats (volume or slices)]] <<BR>> |
FreeSurfer File Formats
FreeSurfer creates its own file formats for storing and manipulating volumetric, surface and transform data, including mgh, mgz, gca, bshort, bfloat, COR, surface, curv, w, annot, patch, gcs, dat, xfm, m3d and lta. These FreeSurfer native formats are summarized below, along with some closely-related external image formats.
1.0 FreeSurfer Native Formats
1.1 Volume
1.2 Surface
FreeSurfer Surface File Formats FreeSurfer formats for the surfaces themselves, and also for vertex-wise data in 'curv' and 'W' formats.
Surface registration template "tif" content and format: TemplateTifImageFiles
1.3 Transform
- xfm
- m3d
1.4 Labels, Color Lookup Tables and Annotation Files