GrahamWideman pages
Useful pages
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Description |
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Concepts (articles by me) |
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Cross-reference table showing files read and written by each step in recon-all |
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Article on labels, colortables and annotations |
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Editing labels/annotations in tksurfer |
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Creating and using "tif" templates for spherical registration of surfaces |
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Creating and using GCA atlas files for parcellation |
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Discussion of the contents and format of the so-called "Image" file format used to store FreeSurfer surface-registration template data. |
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Platform topics |
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Report on configuring 2013-era desktop hardware for Linux and FreeSurfer, using Mint 15 distribution. |
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Scripts |
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Sample scripts to produce "screencaps" en masse from tksurfer and tkmedit for QA |
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Programs/Scripts (... for which I wrote some documentation) |
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Freesurfer's surface-viewing application. (I completed the list of flagged arguments.) |
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Curvature-related statistics |
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Combine label files plus colortable into an annotation file |
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Extract label file from annotation file |
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Use data from multiple subjects to create a surface registration template file |
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Use data from multiple subjects to create a volume registration template |
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For one subject, register to a registration template (usually resulting in ?h.sphere.reg) |
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"Paint" data from a template file "onto a given surface". Allows viewing data from a template file. |
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Source code suggestions |
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Code relating to -delink |
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Code to allow the tool window's per-vertex data fields to expand on window resize |
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Issues |
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Issues regarding the tksurfer functionality relating to creating and editing labels and annotations |
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Wiki |
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Distilled instructions on how to insert an image on a wiki page |
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Test Pages
GrahamWideman