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FreeSurfer Tutorial and Workshop Quiz
Discuss the answers to these questions with your partner.
What is the difference between a volume and a surface?
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Do I have to use two MPRAGEs to run recon-all? Explain.
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Can FreeSurfer help me select a region of interest and measure certain quantities within? How?
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What is fsaverage made of?
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What measures will FreeSurfer give me?
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How long does it take for recon-all to finish processing one subject?
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How long would it take you to do this manually?
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Why do I have to set so many variables before using FreeSurfer?
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Where do I find all those fantastic stats files FreeSurfer created for me?
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When mailing the FreeSurfer list about a problem, what information should I include?
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Why is spherical averaging better than current volume-based methods out there?
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What is a limitation of this procedure?
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When you do all that crazy morph stuff, are you changing the data?
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When I report my findings in a paper, is there any way to report the Talairach coordinates?
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Do I have to remove every bit of skull, dura, etc. that I see in the brainmask? Why or why not?
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Oh no! I made all these edits to a subject but now I want to rerun recon-all on the subject again with a new version of FreeSurfer. Will I lose all my work?
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Where do all those atlases come from that FreeSurfer uses?
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If a ran my subjects with version 4.0, can I run the rest with the newest version?
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How do I control for head size?
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