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|| 8:00 - 8:30 || '''optional -''' Basic Unix Tutorial for !FreeSurfer [[http://www.ee.surrey.ac.uk/Teaching/Unix|1. Surrey]], [[http://docstore.mik.ua/orelly/linux/lnut/index.htm|2. O'Reilly]] || tutorial || Allison Stevens || || 8:00 - 8:30 || '''optional -''' [[attachment:freesurfer.unix_tutorial.apr2009.ppt|Unix Tutorial for !FreeSurfer Users|&do=get]] [[http://www.ee.surrey.ac.uk/Teaching/Unix|1. Surrey]], [[http://docstore.mik.ua/orelly/linux/lnut/index.htm|2. O'Reilly]] || tutorial || Allison Stevens ||

FreeSurfer Course, April 6 and 7, 2009

MGH, Charlestown Navy Yard, Conference Room A

Monday, April 6th - Introduction / Single Subject / Group Analysis

Time

Title

Type

Lecturer

8:00 - 8:30

optional - Unix Tutorial for !FreeSurfer Users 1. Surrey, 2. O'Reilly

tutorial

Allison Stevens

8:30 - 9:00

Course Registration

sign-in

staff

9:00 - 9:30

Introduction to Freesurfer

talk

Bruce Fischl

9:30 - 10:00

Accuracy, Reliability and Validation

talk

David Salat

10:00 - 10:15

break

10:15 - 11:15

Analyzing the Individual Subject

talk

Bruce Fischl

11:15 - 11:45

Tkmedit/Tksurfer demonstration

demo

Doug Greve

11:45 - 12:15

Interaction with Individual Subject Data

tutorial

staff

12:15 - 1:00

lunch

1:00 - 1:30

FreeSurfer Applications

talk

David Salat

1:30 - 2:00

Surface-based Smoothing/Surface-based Registration

talk

Doug Greve

2:00 - 2:15

break

2:15 - 3:00

Group Analysis / GLM / Multiple Comparisons

talk

Doug Greve

3:00 - 4:00

Group Analysis / Multiple Comparisons - mri_glmfit

tutorial

staff

4:00 - 4:15

QDEC demonstration

demo

Nick Schmansky

4:15 - 5:00

Group Analysis - qdec

tutorial

staff

5:00 - 5:30

Inferring architectonic boundaries from in-vivo MRI

talk

Bruce Fischl

5:30 -

optional - FreeSurfer Installation on Personal Laptops

one-on-one

Nick Schmansky

5:30 -

optional - Start Processing Your Own Data

one-on-one

Allison Stevens

Tuesday, April 7th - ROIs / Troubleshooting / Multi-Modal / QA / Future Directions

Time

Title

Type

Lecturer

9:00 - 10:00

ROI Analysis

talk

Doug Greve

10:00 - 10:45

ROI Analysis

tutorial

staff

10:45 - 11:00

break

11:00 - 11:15

Failure Modes

talk

Bruce Fischl

11:15 - 12:15

Troubleshooting, Troubleshooting demonstration

tutorial

staff, Allison

12:15 - 1:00

lunch

1:00 - 2:15

Multi-Modal Integration: ROI and Surface-based Analysis

talk

Doug Greve

2:15 - 3:15

Multi-Modal Integration

tutorial

staff

3:15 - 3:30

break

3:30 - 4:30

Future Directions of FreeSurfer:

3:30 - 3:50

Combined Volume and Surface Registration

talk

Lilla Zollei

3:50 - 4:10

TRActs Constrained by UnderLying Anatomy (TRACULA)

talk

Anastasia Yendiki

4:10 - 4:30

Automated segmentation of hippocampal subfields

talk

Koen Van Leemput

4:30 - 5:15

Question and Answer Session, FsQuiz

talk

staff

FsTutorial/April2009CourseSchedule (last edited 2009-12-11 16:12:57 by NickSchmansky)