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|| 8:00 - 9:00 || Course Registration || sign-in || [[attachment:boston_fs_course_jan2009.jpg|staff|&do=get]] ||
|| 8:00 - 8:30 || '''optional -''' Unix Tutorial for !FreeSurfer [[http://www.ee.surrey.ac.uk/Teaching/Unix|1. Surrey]], [[http://docstore.mik.ua/orelly/linux/lnut/index.htm|2. O'Reilly]] || tutorial || Allison Stevens ||
|| 9:00 - 9:20 || [[attachment:freesurfer.intro.2009.ppt|Introduction to Freesurfer|&do=get]]|| talk || Bruce Fischl ||
|| 9:20 - 10:00 || [[attachment:freesurfer.applications.2009.ppt|FreeSurfer Applications|&do=get]] || talk || David Salat ||
|| 10:00 - 10:30 || [[attachment:freesurfer.reliability.2009.ppt|Accuracy, Reliability and Validation|&do=get]] || talk || David Salat ||
|| 10:30 - 10:45 || '''break''' || || ||
|| 10:45 - 11:45 || [[attachment:fsrecon.ppt|Analyzing the Individual Subject|&do=get]] || talk|| Doug Greve ||
|| 11:45 - 12:30 || '''lunch''' || || ||
|| 12:30 - 1:00 || Tkmedit/Tksurfer demonstration || demo || Doug Greve ||
|| 1:00 - 1:30 || [[FsTutorial/OutputData|Interaction with Individual Subject Data]] || tutorial || staff ||
|| 1:30 - 2:45 || [[attachment:freesurfer.groupanalysis.ppt|Group Analysis / GLM / Multiple Comparisons|&do=get]] || talk || Doug Greve ||
|| 2:45 - 3:00 || QDEC demonstration || demo || Nick Schmansky || 		|| 8:00 - 8:30 || '''optional -''' Basic Unix Tutorial for !FreeSurfer [[http://www.ee.surrey.ac.uk/Teaching/Unix|1. Surrey]], [[http://docstore.mik.ua/orelly/linux/lnut/index.htm|2. O'Reilly]] || tutorial || Allison Stevens ||
|| 8:30 - 9:00 || Course Registration || sign-in || [[attachment:boston_fs_course_jan2009.jpg|staff|&do=get]] ||
|| 9:00 - 9:30 || [[attachment:freesurfer.intro.2009.ppt|Introduction to Freesurfer|&do=get]]|| talk || Bruce Fischl ||
|| 9:30 - 10:00 || [[attachment:freesurfer.reliability.2009.ppt|Accuracy, Reliability and Validation|&do=get]] || talk || David Salat ||
|| 10:00 - 10:15 || '''break''' || || ||
|| 10:15 - 11:15 || [[attachment:fsrecon.ppt|Analyzing the Individual Subject|&do=get]] || talk|| Doug Greve ||
|| 11:15 - 11:45 || Tkmedit/Tksurfer demonstration || demo || Doug Greve ||
|| 11:0045 - 12:15 || [[FsTutorial/OutputData|Interaction with Individual Subject Data]] || tutorial || staff ||
|| 12:15 - 1:00 || '''lunch''' || || ||
|| 1:00 - 1:30 || [[attachment:freesurfer.applications.2009.ppt|FreeSurfer Applications|&do=get]] || talk || David Salat ||
|| 1:30 - 1:45 || QDEC demonstration || demo || Nick Schmansky ||
|| 1:45 - 3:00 || [[attachment:freesurfer.groupanalysis.ppt|Group Analysis / GLM / Multiple Comparisons|&do=get]] || talk || Doug Greve ||
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|| 5:00 - || '''optional -''' [[DownloadAndInstall|FreeSurfer Installation on Personal Laptops]] || one-on-one || Nick Schmansky ||
|| 5:00 - || '''optional -''' Start Processing Your Own Data || one-on-one || Allison Stevens || 		|| 5:00 - 5:30 || [[attachment:freesurfer.inferring_architectonics.2009.ppt|Inferring architectonic boundaries from in-vivo MRI|&do=get]] || talk || Bruce Fischl ||
|| 5:30 - || '''optional -''' [[DownloadAndInstall|FreeSurfer Installation on Personal Laptops]] || one-on-one || Nick Schmansky ||
|| 5:30 - || '''optional -''' Start Processing Your Own Data || one-on-one || Allison Stevens ||
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|| 3:30 - 4:30 || Question and Answer Session, FsQuiz || talk || staff ||
|| 4:30 - 6:00 || Future Directions of !FreeSurfer: || || ||
|| 4:30 - 5:00 || [[attachment:freesurfer.inferring_architectonics.2009.ppt|Inferring architectonic boundaries from in-vivo MRI|&do=get]] || talk || Bruce Fischl ||
|| 5:00 - 5:20 || [[attachment:CVS-lzollei.ppt|Combined Volume and Surface Registration|&do=get]] || talk || Lilla Zollei ||
|| 5:20 - 5:40 || [[attachment:tracula,fs.ppt|TRActs Constrained by UnderLying Anatomy (TRACULA)|&do=get]] || talk || Anastasia Yendiki ||
|| 5:40 - 6:00 || [[attachment:HippocampalSubfields-Koen.ppt|Automated segmentation of hippocampal subfields|&do=get]] || talk || Koen Van Leemput || 		|| 3:30 - 4:30 || Future Directions of !FreeSurfer: || || ||
|| 3:30 - 3:50 || [[attachment:CVS-lzollei.ppt|Combined Volume and Surface Registration|&do=get]] || talk || Lilla Zollei ||
|| 3:50 - 4:10|| [[attachment:tracula,fs.ppt|TRActs Constrained by UnderLying Anatomy (TRACULA)|&do=get]] || talk || Anastasia Yendiki ||
|| 4:10 - 4:30 || [[attachment:HippocampalSubfields-Koen.ppt|Automated segmentation of hippocampal subfields|&do=get]] || talk || Koen Van Leemput ||
|| 4:30 - 5:30 || Question and Answer Session, FsQuiz || talk || staff ||

Monday, April 6th - Introduction / Single Subject / Group Analysis

Time

Title

Type

Lecturer

8:00 - 8:30

optional - Basic Unix Tutorial for FreeSurfer 1. Surrey, 2. O'Reilly

tutorial

Allison Stevens

8:30 - 9:00

Course Registration

sign-in

staff

9:00 - 9:30

Introduction to Freesurfer

talk

Bruce Fischl

9:30 - 10:00

Accuracy, Reliability and Validation

talk

David Salat

10:00 - 10:15

break

10:15 - 11:15

Analyzing the Individual Subject

talk

Doug Greve

11:15 - 11:45

Tkmedit/Tksurfer demonstration

demo

Doug Greve

11:0045 - 12:15

Interaction with Individual Subject Data

tutorial

staff

12:15 - 1:00

lunch

1:00 - 1:30

FreeSurfer Applications

talk

David Salat

1:30 - 1:45

QDEC demonstration

demo

Nick Schmansky

1:45 - 3:00

Group Analysis / GLM / Multiple Comparisons

talk

Doug Greve

3:00 - 3:15

break

3:15 - 4:15

Group Analysis / Multiple Comparisons - mri_glmfit

tutorial

staff

4:15 - 5:00

Group Analysis - qdec

tutorial

staff

5:00 - 5:30

Inferring architectonic boundaries from in-vivo MRI

talk

Bruce Fischl

5:30 -

optional - FreeSurfer Installation on Personal Laptops

one-on-one

Nick Schmansky

5:30 -

optional - Start Processing Your Own Data

one-on-one

Allison Stevens

Tuesday, April 7th - ROIs / Troubleshooting / Multi-Modal / QA / Future Directions

Time

Title

Type

Lecturer

9:00 - 10:00

ROI Analysis

talk

Doug Greve

10:00 - 10:45

ROI Analysis

tutorial

staff

10:45 - 11:00

break

11:00 - 11:15

Failure Modes

talk

Bruce Fischl

11:15 - 12:15

Troubleshooting

tutorial

staff

12:15 - 1:00

lunch

1:00 - 2:15

Multi-Modal Integration: ROI and Surface-based Analysis

talk

Doug Greve

2:15 - 3:15

Multi-Modal Integration

tutorial

staff

3:15 - 3:30

break

3:30 - 4:30

Future Directions of FreeSurfer:

3:30 - 3:50

Combined Volume and Surface Registration

talk

Lilla Zollei

3:50 - 4:10

TRActs Constrained by UnderLying Anatomy (TRACULA)

talk

Anastasia Yendiki

4:10 - 4:30

Automated segmentation of hippocampal subfields

talk

Koen Van Leemput

4:30 - 5:30

Question and Answer Session, FsQuiz

talk

staff

FsTutorial/April2009CourseSchedule (last edited 2009-12-11 16:12:57 by NickSchmansky)