Diff for "FsTutorial/April2009CourseSchedule"

Differences between revisions 20 and 21

FreeSurfer Course, April 6 and 7, 2009

MGH, Charlestown Navy Yard, Conference Room A

Monday, April 6th - Introduction / Single Subject / Group Analysis

Time	Title	Type	Lecturer
8:00 - 8:30	optional - Unix Tutorial for FreeSurfer Users 1. Surrey, 2. O'Reilly	tutorial	Allison Stevens
8:30 - 9:00	Course Registration	sign-in	staff
9:00 - 9:30	Introduction to Freesurfer	talk	Bruce Fischl
9:30 - 10:00	Accuracy, Reliability and Validation	talk	David Salat
10:00 - 10:15	break
10:15 - 11:15	Analyzing the Individual Subject	talk	Bruce Fischl
11:15 - 11:45	Tkmedit/Tksurfer demonstration	demo	Doug Greve
11:45 - 12:15	Interaction with Individual Subject Data	tutorial	staff
12:15 - 1:00	lunch
1:00 - 1:30	FreeSurfer Applications	talk	David Salat
1:30 - 2:00	Surface-based Smoothing/Surface-based Registration	talk	Doug Greve
2:00 - 2:15	break
2:15 - 3:00	Group Analysis / GLM / Multiple Comparisons	talk	Doug Greve
3:00 - 4:00	Group Analysis / Multiple Comparisons - mri_glmfit	tutorial	staff
4:00 - 4:15	QDEC demonstration	demo	Nick Schmansky
4:15 - 5:00	Group Analysis - qdec	tutorial	staff
5:00 - 5:30	Inferring architectonic boundaries from in-vivo MRI	talk	Bruce Fischl
5:30 -	optional - FreeSurfer Installation on Personal Laptops	one-on-one	Nick Schmansky
5:30 -	optional - Start Processing Your Own Data	one-on-one	Allison Stevens

Time	Title	Type	Lecturer
9:00 - 10:00	ROI Analysis	talk	Doug Greve
10:00 - 10:45	ROI Analysis	tutorial	staff
10:45 - 11:00	break
11:00 - 11:15	Failure Modes	talk	Bruce Fischl
11:15 - 12:15	Troubleshooting, Troubleshooting demonstration	tutorial	staff, Allison
12:15 - 1:00	lunch
1:00 - 2:15	Multi-Modal Integration: ROI and Surface-based Analysis	talk	Doug Greve
2:15 - 3:15	Multi-Modal Integration	tutorial	staff
3:15 - 3:30	break
3:30 - 4:30	Future Directions of FreeSurfer:
3:30 - 3:50	Combined Volume and Surface Registration	talk	Lilla Zollei
3:50 - 4:10	TRActs Constrained by UnderLying Anatomy (TRACULA)	talk	Anastasia Yendiki
4:10 - 4:30	Automated segmentation of hippocampal subfields	talk	Koen Van Leemput
4:30 - 5:15	Question and Answer Session, FsQuiz	talk	staff

FsTutorial/April2009CourseSchedule (last edited 2009-12-11 16:12:57 by NickSchmansky)

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-|| 8:00 - 8:30 || '''optional -''' [[attachment:freesurfer.unix_tutorial.apr2009.ppt|Unix Tutorial for FreeSurfer Users|&do=get]] [[http://www.ee.surrey.ac.uk/Teaching/Unix|1. Surrey]], [[http://docstore.mik.ua/orelly/linux/lnut/index.htm|2. O'Reilly]]  || tutorial || Allison Stevens ||

|| 8:30 - 9:00 || Course Registration || sign-in || [[attachment:boston_fs_course_jan2009.jpg|staff|&do=get]] ||

|| 9:00 - 9:30 || [[attachment:freesurfer.intro.2009.ppt|Introduction to Freesurfer|&do=get]]|| talk || Bruce Fischl ||

|| 9:30 - 10:00 || [[attachment:freesurfer.reliability.2009.ppt|Accuracy, Reliability and Validation|&do=get]] || talk || David Salat ||
+|| 8:00 - 8:30 || '''optional -''' [[ftp://surfer.nmr.mgh.harvard.edu/pub/docs/unix_tutorial.ppt|Unix Tutorial for FreeSurfer Users|&do=get]] [[http://www.ee.surrey.ac.uk/Teaching/Unix|1. Surrey]], [[http://docstore.mik.ua/orelly/linux/lnut/index.htm|2. O'Reilly]]  || tutorial || Allison Stevens ||

|| 8:30 - 9:00 || Course Registration || sign-in || [[ftp://surfer.nmr.mgh.harvard.edu/pub/docs/boston_fs_course_jan2009.jpg|staff|&do=get]] ||

|| 9:00 - 9:30 || [[ftp://surfer.nmr.mgh.harvard.edu/pub/docs/freesurfer.intro.2009.ppt|Introduction to Freesurfer|&do=get]]|| talk || Bruce Fischl ||

|| 9:30 - 10:00 || [[ftp://surfer.nmr.mgh.harvard.edu/pub/docs/freesurfer.reliability.2009.ppt|Accuracy, Reliability and Validation|&do=get]] || talk || David Salat ||
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-|| 10:15 - 11:15 || [[attachment:fsrecon.ppt|Analyzing the Individual Subject|&do=get]] || talk|| Bruce Fischl ||
+|| 10:15 - 11:15 || [[ftp://surfer.nmr.mgh.harvard.edu/pub/docs/fsrecon.ppt|Analyzing the Individual Subject|&do=get]] || talk|| Bruce Fischl ||
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-|| 1:00 - 1:30 || [[attachment:freesurfer.applications.2009.ppt|FreeSurfer Applications|&do=get]] || talk || David Salat ||

|| 1:30 - 2:00 || [[attachment:fs.surface-based-analysis.ppt|Surface-based Smoothing/Surface-based Registration|&do=get]] || talk || Doug Greve ||
+|| 1:00 - 1:30 || [[ftp://surfer.nmr.mgh.harvard.edu/pub/docs/freesurfer.applications.2009.ppt|FreeSurfer Applications|&do=get]] || talk || David Salat ||

|| 1:30 - 2:00 || [[ftp://surfer.nmr.mgh.harvard.edu/pub/docs/fs.surface-based-analysis.ppt|Surface-based Smoothing/Surface-based Registration|&do=get]] || talk || Doug Greve ||
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-|| 2:15 - 3:00 || [[attachment:freesurfer.groupanalysis.ppt|Group Analysis / GLM / Multiple Comparisons|&do=get]] || talk || Doug Greve ||
+|| 2:15 - 3:00 || [[ftp://surfer.nmr.mgh.harvard.edu/pub/docs/freesurfer.groupanalysis.ppt|Group Analysis / GLM / Multiple Comparisons|&do=get]] || talk || Doug Greve ||
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-|| 5:00 - 5:30 || [[attachment:freesurfer.inferring_architectonics.2009.ppt|Inferring architectonic boundaries from in-vivo MRI|&do=get]] || talk || Bruce Fischl ||
+|| 5:00 - 5:30 || [[ftp://surfer.nmr.mgh.harvard.edu/pub/docs/freesurfer.inferring_architectonics.2009.ppt|Inferring architectonic boundaries from in-vivo MRI|&do=get]] || talk || Bruce Fischl ||
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-|| 5:30 - || '''optional -''' [[attachment:runningyourdata.ppt|Start Processing Your Own Data|&do=get]]|| one-on-one || Allison Stevens ||
+|| 5:30 - || '''optional -''' [[ftp://surfer.nmr.mgh.harvard.edu/pub/docs/runningyourdata.ppt|Start Processing Your Own Data|&do=get]]|| one-on-one || Allison Stevens ||
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-|| 9:00 - 10:00 || [[attachment:fs.roi.ppt|ROI Analysis|&do=get]] || talk || Doug Greve ||
+|| 9:00 - 10:00 || [[ftp://surfer.nmr.mgh.harvard.edu/pub/docs/fs.roi.ppt|ROI Analysis|&do=get]] || talk || Doug Greve ||
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-|| 11:00 - 11:15 || [[attachment:freesurfer.failure_modes.2009.ppt|Failure Modes|&do=get]] || talk || Bruce Fischl||
+|| 11:00 - 11:15 || [[ftp://surfer.nmr.mgh.harvard.edu/pub/docs/freesurfer.failure_modes.2009.ppt|Failure Modes|&do=get]] || talk || Bruce Fischl||
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-|| 1:00 - 2:15 || [[attachment:fs.multimodal-integration.ppt|Multi-Modal Integration: ROI and Surface-based Analysis|&do=get]] || talk || Doug Greve ||
+|| 1:00 - 2:15 || [[ftp://surfer.nmr.mgh.harvard.edu/pub/docs/fs.multimodal-integration.ppt|Multi-Modal Integration: ROI and Surface-based Analysis|&do=get]] || talk || Doug Greve ||
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-|| 3:30 - 3:50 || [[attachment:CVS-lzollei.ppt|Combined Volume and Surface Registration|&do=get]] || talk || Lilla Zollei ||

|| 3:50 - 4:10|| [[attachment:tracula,fs.ppt|TRActs Constrained by UnderLying Anatomy (TRACULA)|&do=get]] || talk || Anastasia Yendiki ||
+|| 3:30 - 3:50 || [[ftp://surfer.nmr.mgh.harvard.edu/pub/docs/CVS-lzollei.ppt|Combined Volume and Surface Registration|&do=get]] || talk || Lilla Zollei ||

|| 3:50 - 4:10|| [[ftp://surfer.nmr.mgh.harvard.edu/pub/docs/tracula,fs.ppt|TRActs Constrained by UnderLying Anatomy (TRACULA)|&do=get]] || talk || Anastasia Yendiki ||

FreeSurfer Course, April 6 and 7, 2009

MGH, Charlestown Navy Yard, Conference Room A

Monday, April 6th - Introduction / Single Subject / Group Analysis

Tuesday, April 7th - ROIs / Troubleshooting / Multi-Modal / QA / Future Directions