Diff for "FsTutorial/Brazil2011CourseSchedule"

Differences between revisions 1 and 23 (spanning 22 versions)

FreeSurfer Tutorial and Workshop in São Paulo, Brazil

16, 17, & 18 (Sat.,Sun.,Mon.) April 2011

The FreeSurfer Development Team is hosting a three-day course for beginner and experienced users of FreeSurfer. Topics are listed below. There are 40 available spots for this course (see course registration).

Computers will be provided to all pairs of registrants, which will have FreeSurfer and data already installed. Attendees will work in pairs (sharing a computer).

The course will be held at São Paulo healthcare complex of HCFMUSP.

Contact: Pedro Paulo de M. Oliveira Jr. ( ppj at netfilter dot com dot br )

Location

Hospital das Clínicas - Avenida Dr Eneas de Carvalho Aguiar, 44 - São Paulo - SP - Brazil - (hotel,map)

The course will be held at the Radiology Center Building, in the Amphitheatre C.

Saturday, 16 April - Introduction / Single Subject / Troubleshooting

Time	Title	Type	Lecturer
8:30 - 9:00	Course Registration	sign-in	staff
9:00 - 9:30	Unix Tutorial for FreeSurfer Users 1. Surrey, 2. O'Reilly	tutorial	Pedro Paulo de M. Oliveira Jr.
9:30 - 10:00	Intro to FreeSurfer Jargon	talk	Pedro Paulo de M. Oliveira Jr.
10:00 - 10:30	Introduction to Freesurfer	talk	Nick Schmansky
10:30 - 10:45	break
10:45 - 11:45	Analyzing the Individual Subject	talk	Allison Stevens
11:45 - 12:45	Lunch	--	--
12:45 - 1:15	Tkmedit/Tksurfer demonstration	demo	Nick Schmansky
1:15 - 2:15	Interaction with Individual Subject Data Tutorial	tutorial	staff
2:15 - 2:30	break
2:30- 3:00	Failure Modes	talk	Allison Stevens
3:00 - 4:00	Troubleshooting Demonstration, Troubleshooting Tutorial	tutorial	staff, Allison
4:00 - 4:30	Quality Checking a Recon	demo	Allison Stevens
4:30 - 5:00	FreeSurfer Applications	talk	Nick Schmansky

Sunday, 17 April - Longitudinal / Registration / ROIs /Diffusion

Time	Title	Type	Lecturer
9:00 - 9:45	Registration Methods	talk	Lilla Zollei
9:45 - 10:15	Longitudinal FreeSurfer see also: LongitudinalProcessing	talk	Lilla Zollei
10:15 - 10:30	break
10:30 - 10:45	Longitudinal tutorial	tutorial	staff
10:45 -11:15	ROI Analysis	talk	Allison Stevens
11:15 - 11:45	ROI Analysis Tutorial	tutorial	staff
11:45 - 1:00	Lunch	--	--
1:00 - 2:15	Diffusion Data Processing	talk	Lilla Zollei
2:15 - 2:30	break
2:30 - 3:00	Diffusion Data Processing	talk	Lilla Zollei
3:00 - 4:00	Diffusion Processing Tutorial	tutorial	staff

Monday, 18 April - Group Analysis / Q&A

9:00 - 10:00	Group Analysis / GLM / Multiple Comparisons	talk	Lilla Zollei
10:00 - 10:30	QDEC demonstration	demo	Nick Schmansky
10:30 - 10:45	break
10:45 - 11:45	Group Analysis / Multiple Comparisons - mri_glmfit Tutorial	tutorial	staff
10:45 - 11:45	Group Analysis - qdec Tutorial	tutorial	staff
11:45 - 1:00	Lunch	--	--
1:00 - 2:15	TBD	TBD	TBD
2:15 - 2:30	break & Evaluation
2:30 - 3:30	TBD	TBD	TBD
3:30 - 4:00	Question and Answer Session, FsQuiz	talk	staff

FsTutorial/Brazil2011CourseSchedule (last edited 2012-06-20 20:29:07 by NickSchmansky)

-  ⇤ ← Revision 1 as of 2011-03-07 12:49:50 → 
  Size: 7049
  Editor: AllisonStevens
  Comment:
+   ← Revision 23 as of 2011-03-22 09:24:25 → ⇥
  Size: 6426
  Editor: NickSchmansky
  Comment: no .kmz file
-Deletions are marked like this.
+Additions are marked like this.
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-#acl AdminGroup:read,write,delete,revert PedroOliveira:read,write,delete,revert All:read
+###acl AdminGroup:read,write,delete,revert PedroOliveira:read,write,delete,revert All:
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-=== 16, 17, & 18 April 2011 ===
+=== 16, 17, & 18 (Sat.,Sun.,Mon.) April 2011 ===
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-The FreeSurfer Development Team is hosting a three-day course for beginner and experienced users of FreeSurfer. Day 1 will be an introduction to FreeSurfer (or a refresher for those more experienced). Day 2 will cover everything you need to know for analyzing your data. Topics are listed below. There are only 30 available spots for this course. The course will not cover FS-FAST or fMRI analysis.
+The !FreeSurfer Development Team is hosting a three-day course for beginner and experienced users of !FreeSurfer. Topics are listed below. There are 40 available spots for this course ([[http://www.neuroimagem.com/|see course registration]]).
 Line 8:
-Computers will be provided to all pairs of registrants, which will have FreeSurfer and data already installed. Attendees will work in pairs (sharing a computer).
+Computers will be provided to all pairs of registrants, which will have !FreeSurfer and data already installed. Attendees will work in pairs (sharing a computer).
 Line 16:
-[[http://www.hcnet.usp.br/|Hospital das Clínicas]] - [[attachment:HospitaldasClinicas.kmz|.kmz|&do=get]] - [[http://maps.google.com/maps?q=Avenida%20Dr%20Eneas%20de%20Carvalho%20Aguiar%2C%2044%20-%20S%C3%A3o%20Paulo%20-%20SP%20-%20Brazil&oe=utf-8&rls=org.mozilla:en-US:official&client=firefox-a&um=1&ie=UTF-8&sa=N&hl=en&tab=wl|Avenida Dr Eneas de Carvalho Aguiar, 44 - São Paulo - SP - Brazil]] -  ([[http://www.atlanticahotels.com.br/atlantica%5Fing/hoteis/estrutura.asp?Numfuncionalidade=292&NumHotel=34&Cidade=S%E3o%20Paulo|hotel]],[[http://maps.google.com/maps?hl=en&q=rua%20Oscar%20Freire%2C%201948%20-%20Jardim%20Paulista%2C%20S%C3%A3o%20Paulo%20-%20SP%2C%2005409000%2C%20Brazil&um=1&ie=UTF-8&sa=N&tab=wl|map]])
+[[http://www.hcnet.usp.br/|Hospital das Clínicas]] - [[http://maps.google.com/maps?q=Avenida%20Dr%20Eneas%20de%20Carvalho%20Aguiar%2C%2044%20-%20S%C3%A3o%20Paulo%20-%20SP%20-%20Brazil&oe=utf-8&rls=org.mozilla:en-US:official&client=firefox-a&um=1&ie=UTF-8&sa=N&hl=en&tab=wl|Avenida Dr Eneas de Carvalho Aguiar, 44 - São Paulo - SP - Brazil]] -  ([[http://www.atlanticahotels.com.br/atlantica/hoteis/estrutura.asp?Numfuncionalidade=292&NumHotel=34&Cidade=S%E3o%20Paulo&titulo=Apresenta%E7%E3o|hotel]],[[http://maps.google.com/maps?hl=en&q=rua%20Oscar%20Freire%2C%201948%20-%20Jardim%20Paulista%2C%20S%C3%A3o%20Paulo%20-%20SP%2C%2005409000%2C%20Brazil&um=1&ie=UTF-8&sa=N&tab=wl|map]])
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-The course will be held at the [[http://upload.wikimedia.org/wikipedia/commons/7/72/Hospitaldocancerdesp2.jpg|Cancer Center Building]], in the 6th floor auditorium.
+The course will be held at the [[http://upload.wikimedia.org/wikipedia/commons/7/72/Hospitaldocancerdesp2.jpg|Radiology Center Building]], in the Amphitheatre C.
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-=== Monday, April 4th - Introduction / Single Subject / MRI / Longitudinal/ Troubleshooting ===
+=== Saturday, 16 April - Introduction / Single Subject / Troubleshooting ===
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-||8:00 - 8:30 ||'''optional -''' [[http://surfer.nmr.mgh.harvard.edu/pub/docs/unix_tutorial_FS_course.ppt|Unix Tutorial for FreeSurfer Users]] [[http://www.ee.surrey.ac.uk/Teaching/Unix|1. Surrey]], [[http://docstore.mik.ua/orelly/linux/lnut/index.htm|2. O'Reilly]] ||tutorial ||Allison Stevens ||
||8:30 - 9:00 ||'''optional -''' Intro to !FreeSurfer Jargon ||talk ||Allison Stevens ||
||8:30 - 9:00 ||'''Course Registration''' ||sign-in ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/boston_fs_course_jan2009.jpg|staff]] ||
||9:00 - 9:30 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/freesurfer.intro.ppt|Introduction to Freesurfer]] ||talk ||Bruce Fischl ||
||9:30 - 10:30 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/fsrecon.ppt|Analyzing the Individual Subject]] ||talk ||Doug Greve ||
+||8:30 - 9:00 ||'''Course Registration''' ||sign-in || [[attachment:brazil2009.jpg|staff]] ||
||9:00 - 9:30 || [[http://surfer.nmr.mgh.harvard.edu/pub/docs/unix_tutorial_FS_course.ppt|Unix Tutorial for FreeSurfer Users]] [[http://www.ee.surrey.ac.uk/Teaching/Unix|1. Surrey]], [[http://docstore.mik.ua/orelly/linux/lnut/index.htm|2. O'Reilly]] ||tutorial || Pedro Paulo de M. Oliveira Jr.||
||9:30 - 10:00 || [[http://surfer.nmr.mgh.harvard.edu/pub/docs/fsjargon.ppt|Intro to FreeSurfer Jargon|&do=get]] ||talk ||Pedro Paulo de M. Oliveira Jr. ||
||10:00 - 10:30 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/freesurfer.intro.ppt|Introduction to Freesurfer]] ||talk || Nick Schmansky ||
-Line 28:
+Line 27:
-||10:45 - 11:15 ||Tkmedit/Tksurfer demonstration ||demo ||Doug Greve ||
||11:15 - 11:45 ||[[FsTutorial/OutputData|Interaction with Individual Subject Data Tutorial]] ||tutorial ||staff ||
||11:45- 12:15 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/freesurfer.failure_modes.ppt|Failure Modes]] ||talk ||Bruce Fischl ||
||12:15 - 1:15 ||'''Lunch''' ||-- ||-- ||
+||10:45 - 11:45 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/fsrecon.ppt|Analyzing the Individual Subject]] ||talk || Allison Stevens ||
||11:45 - 12:45 ||'''Lunch''' ||-- ||-- ||
-Line 33:
+Line 30:
-||1:15 - 2:15 ||Troubleshooting Demonstration, [[FsTutorial/TroubleshootingData|Troubleshooting Tutorial]] ||tutorial ||staff, Allison ||
||2:45 - 3:15 || [[http://surfer.nmr.mgh.harvard.edu/pub/docs/freesurfer.applications.ppt|FreeSurfer Applications]] ||talk || David Salat ||
||3:15 - 3:30 ||'''break''' || || ||
||3:30 - 4:15 || Registration Methods || talk || Lilla Zollei ||
||4:15 - 4:45 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/freesurfer.longitudinal.ppt|Longitudinal FreeSurfer]] ''see also:'' LongitudinalProcessing ||talk ||Martin Reuter ||
||4:45 - 5:30 ||Longitudinal tutorial ||tutorial ||staff ||
+||12:45 - 1:15 ||Tkmedit/Tksurfer demonstration ||demo || Nick Schmansky ||
||1:15 - 2:15 ||[[FsTutorial/OutputData|Interaction with Individual Subject Data Tutorial]] ||tutorial ||staff ||
||2:15 - 2:30 ||'''break''' || || ||
||2:30- 3:00 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/freesurfer.failure_modes.ppt|Failure Modes]] ||talk || Allison Stevens ||
||3:00 - 4:00 ||Troubleshooting Demonstration, [[FsTutorial/TroubleshootingData|Troubleshooting Tutorial]] ||tutorial ||staff, Allison ||
||4:00 - 4:30 ||Quality Checking a Recon ||demo ||Allison Stevens ||
||4:30 - 5:00 || [[http://surfer.nmr.mgh.harvard.edu/pub/docs/freesurfer.applications.ppt|FreeSurfer Applications]] ||talk || Nick Schmansky ||
-Line 42:
+Line 40:
+=== Sunday, 17 April - Longitudinal / Registration / ROIs /Diffusion ===
||'''Time''' ||'''Title''' ||'''Type''' ||'''Lecturer''' ||
||9:00 - 9:45 || Registration Methods || talk || Lilla Zollei ||
||9:45 - 10:15 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/freesurfer.longitudinal.ppt|Longitudinal FreeSurfer]] ''see also:'' LongitudinalProcessing ||talk || Lilla Zollei ||
||10:15 - 10:30 ||'''break''' || || ||
||10:30 - 10:45 ||Longitudinal tutorial ||tutorial ||staff ||
||10:45 -11:15 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/fs.roi.ppt|ROI Analysis]] ||talk || Allison Stevens ||
||11:15 - 11:45 ||[[FsTutorial/AnatomicalROI|ROI Analysis Tutorial]] ||tutorial ||staff ||
||11:45 - 1:00 ||'''Lunch''' ||-- ||-- ||
##||''1:15 - 1:45'' ||''Optional Lunch Talk''- ''[[http://surfer.nmr.mgh.harvard.edu/pub/docs/mri_acquisition.ppt|MRI Acquisition Methods for Morphometry]]'' ||''talk'' ||''Andre van der Kouwe'' ||
||1:00 - 2:15 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/fs.dt_recon-intro.ppt|Diffusion Data Processing]] ||talk ||Lilla Zollei ||
||2:15 - 2:30 ||'''break''' || || ||
||2:30 - 3:00 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/fs.dt_recon-intro.ppt|Diffusion Data Processing]] ||talk ||Lilla Zollei ||
||3:00 - 4:00 ||Diffusion Processing Tutorial ||tutorial ||staff ||
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+Line 55:
-=== Tuesday, April 5th - Group Analysis/ ROIs / Registration / Diffusion ===
||'''Time''' ||'''Title''' ||'''Type''' ||'''Lecturer''' ||
||8:15 - 9:00 ||Quality Checking a Recon ||demo ||Allison Stevens ||
||9:00 - 11:00 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/fs.dt_recon-intro.ppt|Diffusion Data Processing]] ||talk ||Lilla Zollei ||
||11:00 - 11:15 ||'''break''' || || ||
||11:15 - 11:45 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/tracula,fs.ppt|TRActs Constrained by UnderLying Anatomy (TRACULA)]] ||talk ||Anastasia Yendiki ||
||11:45 - 12:45 ||Diffusion Processing Tutorial ||tutorial ||staff ||
||12:45 - 1:45 ||'''Lunch''' ||-- ||-- ||
##||''1:15 - 1:45'' ||''Optional Lunch Talk''- ''[[http://surfer.nmr.mgh.harvard.edu/pub/docs/mri_acquisition.ppt|MRI Acquisition Methods for Morphometry]]'' ||''talk'' ||''Andre van der Kouwe'' ||
||1:45 - 2:45 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/fs.roi.ppt|ROI Analysis]] ||talk ||Doug Greve ||
||2:45 - 3:15 ||[[FsTutorial/AnatomicalROI|ROI Analysis Tutorial]] ||tutorial ||staff ||
||3:15 - 3:30 ||'''break''' || || ||
||3:30 - 4:30 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/freesurfer.groupanalysis.ppt|Group Analysis / GLM / Multiple Comparisons]] ||talk ||Mert Sabuncu ||
||4:30 - 5:00 ||QDEC demonstration ||demo ||Nick Schmansky ||
||5:00 - 6:00 ||[[FsTutorial/GroupAnalysis|Group Analysis / Multiple Comparisons - mri_glmfit Tutorial]] ||tutorial ||staff ||
||5:00 - 6:00 ||[[FsTutorial/QdecGroupAnalysis|Group Analysis - qdec Tutorial]] ||tutorial ||staff ||

=== Wednesday, April 6th - Multi-Modal / Future Directions / fMRI / Q&A ===
||8:30 - 9:45 ||FSFAST ||talk ||Doug Greve ||
||9:45 - 10:00 ||'''break''' || || ||
||10:00 - 11:00 ||FSFAST ||talk ||Doug Greve ||
||11:00 - 12:00 ||FSFAST ||tutorial ||staff ||
||12:00 - 1:00 ||'''Lunch''' ||-- ||-- ||
+=== Monday, 18 April - Group Analysis / Q&A ===
||9:00 - 10:00 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/freesurfer.groupanalysis.ppt|Group Analysis / GLM / Multiple Comparisons]] ||talk || Lilla Zollei ||
||10:00 - 10:30 ||QDEC demonstration ||demo ||Nick Schmansky ||
||10:30 - 10:45 ||'''break''' || || ||
||10:45 - 11:45 ||[[FsTutorial/GroupAnalysis|Group Analysis / Multiple Comparisons - mri_glmfit Tutorial]] ||tutorial ||staff ||
||10:45 - 11:45 ||[[FsTutorial/QdecGroupAnalysis|Group Analysis - qdec Tutorial]] ||tutorial ||staff ||
||11:45 - 1:00 ||'''Lunch''' ||-- ||-- ||
-Line 67:
+Line 63:
-||1:00 - 1:30 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/freesurfer.reliability.ppt|Accuracy, Reliability and Validation]] ||talk ||David Salat ||
##||1:30 - 1:50 ||Future Directions: [[http://surfer.nmr.mgh.harvard.edu/pub/docs/freesurfer.inferring_architectonics.ppt|Inferring architectonic boundaries from in-vivo MRI]] ||talk ||Bruce Fischl ||
||1:50 - 2:15 ||'''break''' & Evaluation || || ||
+||1:00 - 2:15 ||TBD ||TBD ||TBD ||
||2:15 - 2:30 ||'''break''' & Evaluation || || ||
||2:30 - 3:30 ||TBD ||TBD ||TBD ||
-Line 72:
+Line 68:
-||4:30 - 5:00 ||Question and Answer Session, FsQuiz ||talk ||staff ||
+||3:30 - 4:00 ||Question and Answer Session, FsQuiz ||talk ||staff ||