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FreeSurfer Tutorial and Workshop in São Paulo, Brazil

16, 17, & 18 (Sat.,Sun.,Mon.) April 2011

The FreeSurfer Development Team is hosting a three-day course for beginner and experienced users of FreeSurfer. Day 1 will be an introduction to FreeSurfer (or a refresher for those more experienced). Day 2 will cover everything you need to know for analyzing your data. Topics are listed below. There are 40 available spots for this course (see course registration). The course will not cover FS-FAST or fMRI analysis.

Computers will be provided to all pairs of registrants, which will have FreeSurfer and data already installed. Attendees will work in pairs (sharing a computer).

The course will be held at São Paulo healthcare complex of HCFMUSP.

Contact: Pedro Paulo de M. Oliveira Jr. ( ppj at netfilter dot com dot br )

Location

Hospital das Clínicas - .kmz - Avenida Dr Eneas de Carvalho Aguiar, 44 - São Paulo - SP - Brazil - (hotel,map)

The course will be held at the Cancer Center Building, in the 6th floor auditorium.

Saturday, 16 April - Introduction / Single Subject / MRI / Longitudinal/ Troubleshooting

Time

Title

Type

Lecturer

8:30 - 9:00

Course Registration

sign-in

staff

9:00 - 9:30

Unix Tutorial for FreeSurfer Users 1. Surrey, 2. O'Reilly

tutorial

Pedro Paulo

9:30 - 10:00

Intro to FreeSurfer Jargon

talk

Allison Stevens

10:00 - 10:30

Introduction to Freesurfer

talk

Nick Schmansky

10:30 - 10:45

break

10:45 - 11:45

Analyzing the Individual Subject

talk

Allison Stevens

11:45 - 12:45

Lunch

--

--

12:45 - 1:15

Tkmedit/Tksurfer demonstration

demo

Nick Schmansky

1:15 - 2:15

Interaction with Individual Subject Data Tutorial

tutorial

staff

2:15 - 2:30

break

2:30- 3:00

Failure Modes

talk

Allison Stevens

3:00 - 4:00

Troubleshooting Demonstration, Troubleshooting Tutorial

tutorial

staff, Allison

4:00 - 4:30

Quality Checking a Recon

demo

Allison Stevens

4:30 - 5:00

FreeSurfer Applications

talk

Nick Schmansky

Sunday, 17 April - Group Analysis/ ROIs / Registration / Diffusion

Time

Title

Type

Lecturer

9:30 - 10:15

Registration Methods

talk

Lilla Zollei

10:15 - 10:30

break

10:30 - 11:00

Longitudinal FreeSurfer see also: LongitudinalProcessing

talk

Lilla Zollei

11:00 - 11:45

Longitudinal tutorial

tutorial

staff

11:45 - 1:00

Lunch

--

--

1:00 - 2:15

Diffusion Data Processing

talk

Lilla Zollei

2:15 - 2:30

break

2:30 - 3:00

Diffusion Data Processing

talk

Lilla Zollei

3:00 - 4:00

Diffusion Processing Tutorial

tutorial

staff

4:00 - 4:45

ROI Analysis

talk

Allison Stevens

4:45 - 5:15

ROI Analysis Tutorial

tutorial

staff

Monday, 18 April - Multi-Modal / Future Directions / fMRI / Q&A

9:00 - 10:00

Group Analysis / GLM / Multiple Comparisons

talk

Lilla Zollei

10:00 - 10:30

QDEC demonstration

demo

Nick Schmansky

10:30 - 10:45

break

10:45 - 11:45

Group Analysis / Multiple Comparisons - mri_glmfit Tutorial

tutorial

staff

10:45 - 11:45

Group Analysis - qdec Tutorial

tutorial

staff

11:45 - 1:00

Lunch

--

--

1:00 - 2:15

TBD

TBD

TBD

2:15 - 2:30

break & Evaluation

2:30 - 3:30

TBD

TBD

TBD

3:30 - 4:00

Question and Answer Session, FsQuiz

talk

staff

FsTutorial/Brazil2011CourseSchedule (last edited 2012-06-20 20:29:07 by NickSchmansky)