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|| 9:30 - 10:00 || [[attachment:freesurfer.reliability.2009.ppt|Accuracy, Reliability and Validation|&do=get]] || talk || David Salat || || 10:00 - 10:15 || '''break''' || || || || 10:15 - 11:15 || [[attachment:fsrecon.ppt|Analyzing the Individual Subject|&do=get]] || talk|| Bruce Fischl || || 11:15 - 11:45 || Tkmedit/Tksurfer demonstration || demo || Doug Greve || || 11:45 - 12:15 || [[FsTutorial/OutputData|Interaction with Individual Subject Data]] || tutorial || staff || || 12:15 - 1:00 || '''lunch''' || || || || 1:00 - 1:30 || [[attachment:freesurfer.applications.2009.ppt|FreeSurfer Applications|&do=get]] || talk || David Salat || || 1:30 - 2:00 || [[attachment:fs.surface-based-analysis.ppt|Surface-based Smoothing/Surface-based Registration|&do=get]] || talk || Doug Greve || || 2:00 - 2:15 || '''break''' || || || || 2:15 - 3:00 || [[attachment:freesurfer.groupanalysis.ppt|Group Analysis / GLM / Multiple Comparisons|&do=get]] || talk || Doug Greve || || 3:00 - 4:00 || [[FsTutorial/GroupAnalysis|Group Analysis / Multiple Comparisons - mri_glmfit]] || tutorial || staff || || 4:00 - 4:15 || QDEC demonstration || demo || Nick Schmansky || || 4:15 - 5:00 || [[FsTutorial/QdecGroupAnalysis|Group Analysis - qdec]] || tutorial || staff || || 5:00 - 5:30 || [[attachment:freesurfer.longitudinal.ppt|Longitudinal FreeSurfer|&do=get]] || talk || Martin Reuter || || 5:30 - || '''optional -''' [[DownloadAndInstall|FreeSurfer Installation on Personal Laptops]] || one-on-one || Nick Schmansky || || 5:30 - || '''optional -''' [[attachment:runningyourdata.ppt|Start Processing Your Own Data|&do=get]]|| one-on-one || Allison Stevens || |
|| 9:30 - 10:30 || [[attachment:fsrecon.ppt|Analyzing the Individual Subject|&do=get]] || talk|| Bruce Fischl || || 10:30 - 10:45 || '''break''' || || || || 10:45 - 11:15 || Tkmedit/Tksurfer demonstration || demo || Doug Greve || || 11:15 - 11:45 || [[FsTutorial/OutputData|Interaction with Individual Subject Data]] || tutorial || staff || || 11:45 - 12:15 || [[attachment:freesurfer.reliability.2009.ppt|Accuracy, Reliability and Validation|&do=get]] || talk || David Salat || || 12:15 - 12:45 || '''Working lunch''' Optional talk - Introduction to Diffusion Processing || talk || Lilla Zollei || || 12:45 - 1:15 || '''Working lunch''' Optional talk - MRI Acquisition Methods for Morphometry || talk || Andre van der Kouwe || || 1:15 - 1:45 || [[attachment:freesurfer.applications.2009.ppt|FreeSurfer Applications|&do=get]] || talk || David Salat || || 1:45 - 2:15 || [[attachment:fs.surface-based-analysis.ppt|Surface-based Smoothing/Surface-based Registration|&do=get]] || talk || Doug Greve || || 2:15 - 2:30 || '''break''' || || || || 2:30 - 3:15 || [[attachment:freesurfer.groupanalysis.ppt|Group Analysis / GLM / Multiple Comparisons|&do=get]] || talk || Mert Sabuncu || || 3:15 - 4:15 || [[FsTutorial/GroupAnalysis|Group Analysis / Multiple Comparisons - mri_glmfit]] || tutorial || staff || || 4:15 - 4:30 || QDEC demonstration || demo || Nick Schmansky || || 4:30 - 5:15 || [[FsTutorial/QdecGroupAnalysis|Group Analysis - qdec]] || tutorial || staff || || 5:15 - 5:45 || [[attachment:freesurfer.longitudinal.ppt|Longitudinal FreeSurfer|&do=get]] || talk || Martin Reuter || || 5:45 - || '''optional -''' [[DownloadAndInstall|FreeSurfer Installation on Personal Laptops]] || one-on-one || Nick Schmansky || || 5:45 - || '''optional -''' [[attachment:runningyourdata.ppt|Start Processing Your Own Data|&do=get]]|| one-on-one || Allison Stevens || |
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|| 11:00 - 11:15 || [[attachment:freesurfer.failure_modes.2009.ppt|Failure Modes|&do=get]] || talk || Bruce Fischl|| || 11:15 - 12:15 || [[FsTutorial/TroubleshootingData|Troubleshooting]], Troubleshooting demonstration || tutorial || staff, Allison || || 12:15 - 1:00 || '''Working lunch''' Optional talk - Introduction to Diffusion Processing || talk || Lilla Zollei and David Salat || || 1:00 - 2:15 || [[attachment:fs.multimodal-integration.ppt|Multi-Modal Integration: ROI and Surface-based Analysis|&do=get]] || talk || Doug Greve || || 2:15 - 3:15 || [[FsTutorial/MultiModal|Multi-Modal Integration]] || tutorial || staff || || 3:15 - 3:30 || '''break''' || || || || 3:30 - 4:30 || Future Directions of !FreeSurfer: || || || || 3:30 - 3:50 || [[attachment:CVS-lzollei.ppt|Combined Volume and Surface Registration|&do=get]] || talk || Lilla Zollei || || 3:50 - 4:10|| [[attachment:tracula,fs.ppt|TRActs Constrained by UnderLying Anatomy (TRACULA)|&do=get]] || talk || Anastasia Yendiki || || 4:10 - 4:30 || [[attachment:freesurfer.inferring_architectonics.2009.ppt|Inferring architectonic boundaries from in-vivo MRI|&do=get]] || talk || Bruce Fischl || || 4:30 - 5:15 || Question and Answer Session, FsQuiz || talk || staff || |
|| 11:00 - 11:30 || [[attachment:freesurfer.failure_modes.2009.ppt|Failure Modes|&do=get]] || talk || Bruce Fischl|| || 11:30 - 12:30 || [[FsTutorial/TroubleshootingData|Troubleshooting]], Troubleshooting demonstration || tutorial || staff, Allison || || 12:30 - 1:00 || '''Working lunch''' Optional demo - Step-by-Step Through a Recon || demo || TBD || || 1:00 - 1:30 || '''Working lunch''' Optional talk - Application of Diffusion Imaging || talk || David Salat || || 1:30 - 2:45 || [[attachment:fs.multimodal-integration.ppt|Multi-Modal Integration: ROI and Surface-based Analysis|&do=get]] || talk || Doug Greve || || 2:45 - 3:45 || [[FsTutorial/MultiModal|Multi-Modal Integration]] || tutorial || staff || || 3:45 - 4:00 || '''break''' || || || || 4:00 - 5:00 || Future Directions of !FreeSurfer: || || || || 4:00 - 4:20 || [[attachment:CVS-lzollei.ppt|Combined Volume and Surface Registration|&do=get]] || talk || Lilla Zollei || || 4:20 - 4:40|| [[attachment:tracula,fs.ppt|TRActs Constrained by UnderLying Anatomy (TRACULA)|&do=get]] || talk || Anastasia Yendiki || || 4:40 - 5:00 || [[attachment:freesurfer.inferring_architectonics.2009.ppt|Inferring architectonic boundaries from in-vivo MRI|&do=get]] || talk || Bruce Fischl || || 5:00 - 5:30 || Question and Answer Session, FsQuiz || talk || staff || |
FreeSurfer Course, February 1 and 2, 2010
MGH, Charlestown Navy Yard, Building 149, Conference Room A
Monday, February 1st - Introduction / Single Subject / Group Analysis
Time |
Title |
Type |
Lecturer |
8:00 - 8:30 |
optional - Unix Tutorial for FreeSurfer Users 1. Surrey, 2. O'Reilly |
tutorial |
Allison Stevens |
8:30 - 9:00 |
Course Registration |
sign-in |
|
9:00 - 9:30 |
talk |
Bruce Fischl |
|
9:30 - 10:30 |
talk |
Bruce Fischl |
|
10:30 - 10:45 |
break |
|
|
10:45 - 11:15 |
Tkmedit/Tksurfer demonstration |
demo |
Doug Greve |
11:15 - 11:45 |
tutorial |
staff |
|
11:45 - 12:15 |
talk |
David Salat |
|
12:15 - 12:45 |
Working lunch Optional talk - Introduction to Diffusion Processing |
talk |
Lilla Zollei |
12:45 - 1:15 |
Working lunch Optional talk - MRI Acquisition Methods for Morphometry |
talk |
Andre van der Kouwe |
1:15 - 1:45 |
talk |
David Salat |
|
1:45 - 2:15 |
talk |
Doug Greve |
|
2:15 - 2:30 |
break |
|
|
2:30 - 3:15 |
talk |
Mert Sabuncu |
|
3:15 - 4:15 |
tutorial |
staff |
|
4:15 - 4:30 |
QDEC demonstration |
demo |
Nick Schmansky |
4:30 - 5:15 |
tutorial |
staff |
|
5:15 - 5:45 |
talk |
Martin Reuter |
|
5:45 - |
optional - FreeSurfer Installation on Personal Laptops |
one-on-one |
Nick Schmansky |
5:45 - |
optional - Start Processing Your Own Data |
one-on-one |
Allison Stevens |
Tuesday, February 2nd - ROIs / Troubleshooting / Multi-Modal / QA / Future Directions
Time |
Title |
Type |
Lecturer |
9:00 - 10:00 |
talk |
Doug Greve |
|
10:00 - 10:45 |
tutorial |
staff |
|
10:45 - 11:00 |
break |
|
|
11:00 - 11:30 |
talk |
Bruce Fischl |
|
11:30 - 12:30 |
Troubleshooting, Troubleshooting demonstration |
tutorial |
staff, Allison |
12:30 - 1:00 |
Working lunch Optional demo - Step-by-Step Through a Recon |
demo |
TBD |
1:00 - 1:30 |
Working lunch Optional talk - Application of Diffusion Imaging |
talk |
David Salat |
1:30 - 2:45 |
talk |
Doug Greve |
|
2:45 - 3:45 |
tutorial |
staff |
|
3:45 - 4:00 |
break |
|
|
4:00 - 5:00 |
Future Directions of FreeSurfer: |
|
|
4:00 - 4:20 |
talk |
Lilla Zollei |
|
4:20 - 4:40 |
talk |
Anastasia Yendiki |
|
4:40 - 5:00 |
talk |
Bruce Fischl |
|
5:00 - 5:30 |
Question and Answer Session, FsQuiz |
talk |
staff |