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|| 8:30 - 9:00 || Course Registration || sign-in || [[attachment:boston_fs_course_jan2009.jpg|staff|&do=get]] ||
|| 9:00 - 9:30 || [[attachment:freesurfer.intro.2009.ppt|Introduction to Freesurfer|&do=get]]|| talk || Bruce Fischl ||
|| 9:30 - 10:30 || [[attachment:fsrecon.ppt|Analyzing the Individual Subject|&do=get]] || talk|| Bruce Fischl || 		|| 8:30 - 9:00 || Course Registration || sign-in || [[ftp://surfer.nmr.mgh.harvard.edu/pub/docs/boston_fs_course_jan2009.jpg|staff|&do=get]] ||
|| 9:00 - 9:30 || [[ftp://surfer.nmr.mgh.harvard.edu/pub/docs/freesurfer.intro.2009.ppt|Introduction to Freesurfer|&do=get]]|| talk || Bruce Fischl ||
|| 9:30 - 10:30 || [[ftp://surfer.nmr.mgh.harvard.edu/pub/docs/fsrecon.ppt|Analyzing the Individual Subject|&do=get]] || talk|| Bruce Fischl ||
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|| 11:45 - 12:15 || [[attachment:fs.surface-based-analysis.ppt|Surface-based Smoothing/Surface-based Registration|&do=get]] || talk || Doug Greve || || 11:45 - 12:15 || [[ftp://surfer.nmr.mgh.harvard.edu/pub/docs/fs.surface-based-analysis.ppt|Surface-based Smoothing/Surface-based Registration|&do=get]] || talk || Doug Greve ||
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|| 1:15 - 2:15 || [[attachment:fs.roi.ppt|ROI Analysis|&do=get]] || talk || Doug Greve || || 1:15 - 2:15 || [[ftp://surfer.nmr.mgh.harvard.edu/pub/docs/fs.roi.ppt|ROI Analysis|&do=get]] || talk || Doug Greve ||
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|| 3:00 - 3:45 || [[attachment:freesurfer.groupanalysis.ppt|Group Analysis / GLM / Multiple Comparisons|&do=get]] || talk || Mert Sabuncu || || 3:00 - 3:45 || [[ftp://surfer.nmr.mgh.harvard.edu/pub/docs/freesurfer.groupanalysis.ppt|Group Analysis / GLM / Multiple Comparisons|&do=get]] || talk || Mert Sabuncu ||
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|| 5:45 - || '''optional -''' [[attachment:runningyourdata.ppt|Start Processing Your Own Data|&do=get]]|| one-on-one || Allison Stevens || || 5:45 - || '''optional -''' [[ftp://surfer.nmr.mgh.harvard.edu/pub/docs/runningyourdata.ppt|Start Processing Your Own Data|&do=get]]|| one-on-one || Allison Stevens ||
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|| 9:00 - 9:30 || [[attachment:freesurfer.reliability.2009.ppt|Accuracy, Reliability and Validation|&do=get]] || talk || David Salat ||
|| 9:30 - 10:00 || [[attachment:freesurfer.longitudinal.ppt|Longitudinal FreeSurfer|&do=get]] || talk || Martin Reuter ||
|| 10:00 - 10:45 || [[attachment:freesurfer.applications.2009.ppt|FreeSurfer Applications|&do=get]] || talk || David Salat || 		|| 9:00 - 9:30 || [[ftp://surfer.nmr.mgh.harvard.edu/pub/docs/freesurfer.reliability.2009.ppt|Accuracy, Reliability and Validation|&do=get]] || talk || David Salat ||
|| 9:30 - 10:00 || [[ftp://surfer.nmr.mgh.harvard.edu/pub/docs/freesurfer.longitudinal.ppt|Longitudinal FreeSurfer|&do=get]] || talk || Martin Reuter ||
|| 10:00 - 10:45 || [[ftp://surfer.nmr.mgh.harvard.edu/pub/docs/freesurfer.applications.2009.ppt|FreeSurfer Applications|&do=get]] || talk || David Salat ||
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|| 11:00 - 11:30 || [[attachment:freesurfer.failure_modes.2009.ppt|Failure Modes|&do=get]] || talk || Bruce Fischl|| || 11:00 - 11:30 || [[ftp://surfer.nmr.mgh.harvard.edu/pub/docs/freesurfer.failure_modes.2009.ppt|Failure Modes|&do=get]] || talk || Bruce Fischl||
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|| 1:30 - 2:45 || [[attachment:fs.multimodal-integration.ppt|Multi-Modal Integration: ROI and Surface-based Analysis|&do=get]] || talk || Doug Greve || || 1:30 - 2:45 || [[ftp://surfer.nmr.mgh.harvard.edu/pub/docs/fs.multimodal-integration.ppt|Multi-Modal Integration: ROI and Surface-based Analysis|&do=get]] || talk || Doug Greve ||
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|| 4:00 - 4:20 || [[attachment:CVS-lzollei.ppt|Combined Volume and Surface Registration|&do=get]] || talk || Lilla Zollei ||
|| 4:20 - 4:40|| [[attachment:tracula,fs.ppt|TRActs Constrained by UnderLying Anatomy (TRACULA)|&do=get]] || talk || Anastasia Yendiki ||
|| 4:40 - 5:00 || [[attachment:freesurfer.inferring_architectonics.2009.ppt|Inferring architectonic boundaries from in-vivo MRI|&do=get]] || talk || Bruce Fischl || 		|| 4:00 - 4:20 || [[ftp://surfer.nmr.mgh.harvard.edu/pub/docs/CVS-lzollei.ppt|Combined Volume and Surface Registration|&do=get]] || talk || Lilla Zollei ||
|| 4:20 - 4:40|| [[ftp://surfer.nmr.mgh.harvard.edu/pub/docs/tracula,fs.ppt|TRActs Constrained by UnderLying Anatomy (TRACULA)|&do=get]] || talk || Anastasia Yendiki ||
|| 4:40 - 5:00 || [[ftp://surfer.nmr.mgh.harvard.edu/pub/docs/freesurfer.inferring_architectonics.2009.ppt|Inferring architectonic boundaries from in-vivo MRI|&do=get]] || talk || Bruce Fischl ||

FreeSurfer Course, February 1 and 2, 2010

MGH, Charlestown Navy Yard, Building 149, Conference Room A

Monday, February 1st - Introduction / Single Subject / Group Analysis

Time

Title

Type

Lecturer

8:00 - 8:30

optional - Unix Tutorial for FreeSurfer Users 1. Surrey, 2. O'Reilly

tutorial

Allison Stevens

8:30 - 9:00

Course Registration

sign-in

staff

9:00 - 9:30

Introduction to Freesurfer

talk

Bruce Fischl

9:30 - 10:30

Analyzing the Individual Subject

talk

Bruce Fischl

10:30 - 10:45

break

10:45 - 11:15

Tkmedit/Tksurfer demonstration

demo

Doug Greve

11:15 - 11:45

Interaction with Individual Subject Data

tutorial

staff

11:45 - 12:15

Surface-based Smoothing/Surface-based Registration

talk

Doug Greve

12:15 - 12:45

Working lunch Optional talk - Introduction to Diffusion Processing

talk

Lilla Zollei

12:45 - 1:15

Working lunch Optional talk - MRI Acquisition Methods for Morphometry

talk

Andre van der Kouwe

1:15 - 2:15

ROI Analysis

talk

Doug Greve

2:15 - 2:45

ROI Analysis

tutorial

staff

2:45 - 3:00

break

3:00 - 3:45

Group Analysis / GLM / Multiple Comparisons

talk

Mert Sabuncu

3:45 - 4:45

Group Analysis / Multiple Comparisons - mri_glmfit

tutorial

staff

4:45 - 5:00

QDEC demonstration

demo

Nick Schmansky

5:00 - 5:45

Group Analysis - qdec

tutorial

staff

5:45 -

optional - FreeSurfer Installation on Personal Laptops

one-on-one

Nick Schmansky

5:45 -

optional - Start Processing Your Own Data

one-on-one

Allison Stevens

Tuesday, February 2nd - ROIs / Troubleshooting / Multi-Modal / Q&A / Future Directions

Time

Title

Type

Lecturer

9:00 - 9:30

Accuracy, Reliability and Validation

talk

David Salat

9:30 - 10:00

Longitudinal FreeSurfer

talk

Martin Reuter

10:00 - 10:45

FreeSurfer Applications

talk

David Salat

10:45 - 11:00

break

11:00 - 11:30

Failure Modes

talk

Bruce Fischl

11:30 - 12:30

Troubleshooting, Troubleshooting demonstration

tutorial

staff, Allison

12:30 - 1:00

Working lunch Optional demo - Step-by-Step Through a Recon

demo

TBD

1:00 - 1:30

Working lunch Optional talk - Combined Gray Matter/White Matter Analysis of the Aging Brain

talk

David Salat

1:30 - 2:45

Multi-Modal Integration: ROI and Surface-based Analysis

talk

Doug Greve

2:45 - 3:45

Multi-Modal Integration

tutorial

staff

3:45 - 4:00

break

4:00 - 5:00

Future Directions of FreeSurfer:

4:00 - 4:20

Combined Volume and Surface Registration

talk

Lilla Zollei

4:20 - 4:40

TRActs Constrained by UnderLying Anatomy (TRACULA)

talk

Anastasia Yendiki

4:40 - 5:00

Inferring architectonic boundaries from in-vivo MRI

talk

Bruce Fischl

5:00 - 5:30

Question and Answer Session, FsQuiz

talk

staff

FsTutorial/Feb2010CourseSchedule (last edited 2010-02-05 16:28:26 by NickSchmansky)