FreeSurfer Course, April 4 and 5, 2010

MGH, Charlestown Navy Yard, Building 149, Conference Room A

Monday, October 4th - Introduction / Single Subject / ROIs /Group Analysis

Time

Title

Type

Lecturer

8:00 - 8:30

optional - Unix Tutorial for FreeSurfer Users 1. Surrey, 2. O'Reilly

tutorial

Allison Stevens

8:30 - 9:00

optional - Intro to FreeSurfer Jargon

talk

Allison Stevens

8:30 - 9:00

Course Registration

sign-in

staff

9:00 - 9:30

Introduction to Freesurfer

talk

Bruce Fischl

9:30 - 10:30

Analyzing the Individual Subject

talk

Doug Greve

10:30 - 10:45

break

10:45 - 11:15

Tkmedit/Tksurfer demonstration

demo

Doug Greve

11:15 - 11:45

Interaction with Individual Subject Data Tutorial

tutorial

staff

11:45 - 12:15

Surface-based Smoothing/Surface-based Registration

talk

Doug Greve

12:15 - 1:15

Lunch

--

--

12:30 - 1:00

Optional Lunch Talk- FreeSurfer Applications

talk

David Salat

1:15 - 1:45

Intro to MR

talk

Dylan Tisdall

1:45 - 2:30

MRI Acquisition Methods for Morphometry

talk

Andre van der Kouwe

2:30 - 2:45

break

2:45 - 3:15

Longitudinal FreeSurfer see also: LongitudinalProcessing

talk

Martin Reuter

3:15 - 3:45

Failure Modes

talk

Bruce Fischl

3:45 - 4:45

Troubleshooting Demonstration, Troubleshooting Tutorial

tutorial

staff, Allison

4:45 - 5:30

Quality Checking a Recon

demo

Allison Stevens

5:30 -

optional - FreeSurfer Installation on Personal Laptops

one-on-one

Nick Schmansky

5:30 -

optional - Start Processing Your Own Data

one-on-one

Allison Stevens

Tuesday, October 5th - Troubleshooting / Multi-Modal / Q&A / Future Directions

Time

Title

Type

Lecturer

9:00 - 10:00

Group Analysis / GLM / Multiple Comparisons

talk

Mert Sabuncu

10:00 - 11:00

Group Analysis / Multiple Comparisons - mri_glmfit Tutorial

tutorial

staff

11:00 - 11:15

break

11:15 - 11:45

QDEC demonstration

demo

Nick Schmansky

11:45 - 12:30

Group Analysis - qdec Tutorial

tutorial

staff

12:30 - 1:30

Lunch

--

--

12:45 - 1:15

Optional Lunch Talk- Which What to Register

talk

Lilla Zollei

1:30 - 2:30

ROI Analysis

talk

Doug Greve

2:30 - 3:00

ROI Analysis Tutorial

tutorial

staff

3:00 - 3:30

Combined Volume and Surface Registration

talk

Lilla Zollei

3:30 - 3:45

break

3:45 - 4:15

Introduction to Diffusion Processing

talk

Lilla Zollei

4:15 - 5:15

Diffusion Tutorial

tutorial

staff

5:15 - 5:35

TRActs Constrained by UnderLying Anatomy (TRACULA)

talk

Anastasia Yendiki

5:35 -

optional - FreeSurfer Installation on Personal Laptops

one-on-one

Nick Schmansky

5:35 -

optional - Start Processing Your Own Data

one-on-one

Allison Stevens

Wednesday, October 6th -

9:00 - 10:15

Multi-Modal Integration

talk

Doug Greve

10:15 - 11:15

Multi-Modal Integration Tutorial

tutorial

staff

11:15 - 11:30

break

11:30 - 12:00

Accuracy, Reliability and Validation

talk

David Salat

12:00 - 1:00

Lunch

--

--

1:00 - 1:20

Inferring architectonic boundaries from in-vivo MRI

talk

Bruce Fischl

1:20 - 2:20

FSFAST

talk

Doug Greve

2:20 - 3:15

FSFAST

tutorial

staff

3:15 - 3:30

break

3:30 - 4:00

Longitudinal tutorial; checking recon-all.log of failed subject; how to report bugs/ask questions on list

tutorial

staff

4:00 - 4:30

Evaluation

online

attendees

4:30 - 5:15

Question and Answer Session, FsQuiz

talk

staff