Diff for "FsTutorial/May2014CourseSchedule"

Differences between revisions 1 and 27 (spanning 26 versions)

FreeSurfer Course, May 5-7, 2014
MGH, Charlestown Navy Yard, Building 114, Room D1

8:00 - 9:30am Registration Desk Open

Monday, May 5th - Introduction / Single Subject Analysis /Troubleshooting

Time	Title	Type	Lecturer
8:30 - 9:00	optional - Unix Tutorial for FreeSurfer Users	tutorial	Ender Konukoglu
9:00 - 9:15	optional - Intro to FreeSurfer Jargon	talk	Ender Konukoglu
9:15 - 9:30	break
9:30 - 10:00	Introduction to Freesurfer	talk	Bruce Fischl
10:00 - 11:00	Analyzing the Individual Subject	talk	Bruce Fischl
11:00 - 11:20	break
11:20 - 12:00	optional - A Non-physicist's Intro to MR SpinBench	talk	Dylan Tisdall
12:00 - 1:00	Lunch (Suggestions for where to eat)	--	--
1:00 - 1:20	Freeview demonstration	demo	Louis Vinke
1:20 - 2:20	Interaction with Individual Subject Data Tutorial	tutorial	staff
2:20 - 2:50	FreeSurfer Troubleshooting	talk	Bruce Fischl
2:50 - 3:10	break
3:10 - 3:50	Quality Checking a Recon	demo	Allison Stevens
3:50 - 4:50	Troubleshooting Tutorial	tutorial	staff
4:50 - 5:00	Question and Answer Session (Answers to online questions here)	talk	staff

Boston Beer Works location information here and here.
Meet us in front of Building 149 to catch the 6:15pm shuttle bus (it leaves on time!).
If you miss us, we are taking the MGH/Navy Yard shuttle to North Station. From there, cross the street to get to Canal Street. Boston Beer Works will be down that street, on your right. (If you miss the 6:15 bus, the next few buses depart at 6:30pm, 6:45pm, 7pm, 7:15pm, and 7:45pm).

Tuesday, May 6th - Group Analysis / ROI Analysis / Multimodal

Time	Title	Type	Lecturer
9:00 - 9:40	Surface-based Analysis: Intersubject Smoothing & Registration	talk	Doug Greve
9:40 - 10:20	Group Analysis	talk	Ender Konukoglu
10:20 - 10:40	break
10:40 - 11:20	Group Analysis Tutorial	tutorial	staff
11:20 - 11:40	Multiple Comparisons	talk	Doug Greve
11:40 - 12:00	QDEC demonstration	demo	Doug Greve
12:00 - 1:00	Lunch	--	--
1:00 - 1:20	Multiple Comparisons Tutorial	tutorial	staff
1:20 - 2:00	QDEC Tutorial	tutorial	staff
2:00 - 2:30	ROI Analysis	talk	Martin Reuter
2:30 - 2:50	break
2:50 - 3:20	ROI Analysis Tutorial	tutorial	staff
3:20 - 3:50	Longitudinal FreeSurfer see also: LongitudinalProcessing	talk	Martin Reuter
3:50 - 4:30	Longitudinal Tutorial	tutorial	staff
4:30 - 5:30	Basics of fMRI Analysis	talk	Jon Polimeni

Wednesday, May 7th - fMRI / Multimodal / Longitudinal / Future Directions / Q&A

Time	Title	Type	Lecturer
9:00 - 9:45	FSFAST	talk	Doug Greve
9:45 - 10:00	break
10:00 - 10:40	FSFAST	talk	Doug Greve
10:40 - 11:40	FSFAST Tutorial	tutorial	staff
11:40 - 12:40	Lunch	--	--
12:40 - 1:40	Multi-Modal Integration	talk	Lilla Zollei
1:40 - 2:55	Multi-Modal Integration Tutorial	tutorial	staff
2:55 - 3:15	break & Evaluation
3:15 - 3:45	Future Directions	talk	TBD
3:45 - 4:15	optional technical talk - MRI Acquisition Methods for Morphometry	talk	Andre van der Kouwe
4:15 - 4:45	optional technical talk - Motion-compensated neuroanatomical imaging	talk	Dylan Tisdall
4:45 - 5:15	optional technical talk - Registration Methods	talk	Lilla Zollei
5:15 - 5:30	Question and Answer Session (Answers to online questions here), FsQuiz	talk	staff

FsTutorial/May2014CourseSchedule (last edited 2017-09-26 11:36:15 by MorganFogarty)

-  ⇤ ← Revision 1 as of 2014-04-10 10:58:23 → 
  Size: 7812
  Editor: AllisonStevens
  Comment:
+   ← Revision 27 as of 2014-05-02 19:10:22 → ⇥
  Size: 7292
  Editor: AllisonStevens
  Comment:
-Deletions are marked like this.
+Additions are marked like this.
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-=== Monday, Nov 4th - Introduction / Single Subject Analysis /Troubleshooting ===
+=== Monday, May 5th - Introduction / Single Subject Analysis /Troubleshooting ===
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-||8:30 - 9:00 ||'''optional -''' [[http://surfer.nmr.mgh.harvard.edu/pub/docs/unix_tutorial_FS_course.ppt|Unix Tutorial for FreeSurfer Users]] ||tutorial || Maritza Ebling ||
||9:00 - 9:15 ||'''optional -''' [[http://surfer.nmr.mgh.harvard.edu/pub/docs/fsjargon.ppt.pptx|Intro to FreeSurfer Jargon|&do=get]] ||talk || Allison Stevens ||
+||8:30 - 9:00 ||'''optional -''' [[http://surfer.nmr.mgh.harvard.edu/pub/docs/unix_tutorial_FS_course.ppt|Unix Tutorial for FreeSurfer Users]] ||tutorial || Ender Konukoglu ||
||9:00 - 9:15 ||'''optional -''' [[http://surfer.nmr.mgh.harvard.edu/pub/docs/fsjargon.ppt|Intro to FreeSurfer Jargon|&do=get]] ||talk || Ender Konukoglu ||
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-||9:30 - 10:00 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/Nov2013/freesurfer.intro.ppt|Introduction to Freesurfer]] ||talk || Bruce Fischl ||
||10:00 - 11:00 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/Nov2013/fsrecon.ppt|Analyzing the Individual Subject]] ||talk || Doug Greve ||
+||9:30 - 10:00 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/BostonMay2014/freesurfer.intro.ppt|Introduction to Freesurfer]] ||talk || Bruce Fischl ||
||10:00 - 11:00 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/fsrecon.ppt|Analyzing the Individual Subject]] ||talk || Bruce Fischl ||
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-||11:20 - 12:05 ||'''optional -''' [[http://surfer.nmr.mgh.harvard.edu/pub/docs/FreeSurfer_Course_Apr_2013_MRI_Basics.pdf|A Non-physicist's Intro to MR|&do=get]] [[http://www.heartvista.com/SpinBench|SpinBench]]'' ||talk ||Dylan Tisdall ||
||12:05 - 1:00 ||'''Lunch''' [[http://surfer.nmr.mgh.harvard.edu/pub/docs/lunch_map.jpg|  (Suggestions for where to eat)]]||-- ||-- ||
||1:00 - 1:30 ||Freeview/Tksurfer demonstration ||demo ||Doug Greve ||
||1:30 - 2:00 ||[[FsTutorial/OutputData_freeview|Interaction with Individual Subject Data Tutorial]] ||tutorial ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/staff2013.jpg|staff]] ||
||2:00 - 2:30 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/Nov2013/freesurfer.failure_modes.ppt|FreeSurfer Troubleshooting|&do=get]] ||talk || Bruce Fischl ||
||2:30 - 2:50 ||'''break''' || || ||
||2:50 - 3:50 || [[http://surfer.nmr.mgh.harvard.edu/pub/docs/QArecon.ppt | Quality Checking a Recon]] ||demo ||Allison Stevens ||
||3:50 - 5:00 || [[FsTutorial/TroubleshootingData|Troubleshooting Tutorial]] ||tutorial ||staff ||
||5:00 - 5:15 ||Question and Answer Session (Answers to online questions [[http://surfer.nmr.mgh.harvard.edu/fswiki/FsTutorial/QuestionAnswers|here]]) ||talk ||staff ||
+||11:20 - 12:00 ||'''optional -''' [[http://surfer.nmr.mgh.harvard.edu/pub/docs/FreeSurfer_Course_Apr_2013_MRI_Basics.pdf|A Non-physicist's Intro to MR|&do=get]] [[http://www.heartvista.com/SpinBench|SpinBench]]'' ||talk ||Dylan Tisdall ||
||12:00 - 1:00 ||'''Lunch''' [[http://surfer.nmr.mgh.harvard.edu/pub/docs/lunch_map.jpg|  (Suggestions for where to eat)]]||-- ||-- ||
||1:00 - 1:20 ||Freeview demonstration ||demo ||Louis Vinke ||
||1:20 - 2:20 ||[[FsTutorial/OutputData_freeview|Interaction with Individual Subject Data Tutorial]] ||tutorial ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/staff2013.jpg|staff]] ||
||2:20 - 2:50 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/BostonMay2014/freesurfer.failure_modes.ppt|FreeSurfer Troubleshooting|&do=get]] ||talk || Bruce Fischl ||
||2:50 - 3:10 ||'''break''' || || ||
||3:10 - 3:50 || [[http://surfer.nmr.mgh.harvard.edu/pub/docs/QArecon.ppt | Quality Checking a Recon]] ||demo ||Allison Stevens ||
||3:50 - 4:50 || [[FsTutorial/TroubleshootingData|Troubleshooting Tutorial]] ||tutorial ||staff ||
||4:50 - 5:00 ||Question and Answer Session (Answers to online questions [[http://surfer.nmr.mgh.harvard.edu/fswiki/FsTutorial/QuestionAnswers|here]]) ||talk ||staff ||
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-Meet us at 6:10pm at the front of Building 149 (map to be provided soon). <<BR>>
If you miss us, we are taking the 6:15pm MGH/Navy Yard shuttle to North Station (the next few buses depart at 6:30pm, 6:45pm, 7pm, 7:15pm, and 7:45pm).
<<BR>>From there, you cross the street and go down Canal Street. Boston Beer Works will be on your right.
+Meet us in front of [[http://surfer.nmr.mgh.harvard.edu/fswiki/CourseDescription#Map|Building 149]] to catch the 6:15pm shuttle bus (it leaves on time!). <<BR>>
If you miss us, we are taking the MGH/Navy Yard shuttle to North Station. From there, cross the street to get to Canal Street. Boston Beer Works will be down that street, on your right. (If you miss the 6:15 bus, the next few buses depart at 6:30pm, 6:45pm, 7pm, 7:15pm, and 7:45pm).
-Line 37:
+Line 36:
-=== Tuesday, Nov 5th - Group Analysis / ROI Analysis / Multimodal ===
+=== Tuesday, May 6th - Group Analysis / ROI Analysis / Multimodal ===
-Line 39:
+Line 38:
-||9:00 - 9:40 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/Nov2013/fs.surface-based-analysis.ppt|Surface-based Analysis: Intersubject Smoothing & Registration|&do=get]] ||talk ||Doug Greve ||
||9:40 - 10:20 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/Nov2013/freesurfer.groupanalysis.ppt|Group Analysis]] ||talk || Eugenio Iglesias ||
+||9:00 - 9:40 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/fs.surface-based-analysis.ppt|Surface-based Analysis: Intersubject Smoothing & Registration|&do=get]] ||talk ||Doug Greve ||
||9:40 - 10:20 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/BostonMay2014/freesurfer.groupanalysis.pdf|Group Analysis]] ||talk || Ender Konukoglu  ||
-Line 43:
+Line 42:
-||11:20 - 11:40 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/Nov2013/freesurfer.multipecomparisons.ppt|Multiple Comparisons]] ||talk || Eugenio Iglesias ||
||11:40 - 12:00 ||QDEC demonstration ||demo ||Eugenio Iglesias ||
+||11:20 - 11:40 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/BostonMay2014/freesurfer.multipecomparisons.ppt|Multiple Comparisons]] ||talk || Doug Greve ||
||11:40 - 12:00 ||QDEC demonstration ||demo || Doug Greve ||
-Line 47:
+Line 46:
-||1:00 - 2:00 ||[[FsTutorial/QdecGroupAnalysis_freeview|QDEC Tutorial]] ||tutorial ||staff ||
||2:00 - 3:00  ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/Nov2013/fs.roi.ppt|ROI Analysis|&do=get]] ||talk ||Doug Greve ||
||3:00 - 3:20 ||'''break''' || ||
||3:20 - 3:50  ||[[FsTutorial/AnatomicalROI|ROI Analysis Tutorial]] ||tutorial ||staff ||
||3:50 - 4:20|| [[http://surfer.nmr.mgh.harvard.edu/pub/docs/freesurfer.longitudinal.ppt|Longitudinal FreeSurfer|&do=get]] ''see also:'' LongitudinalProcessing ||talk ||Martin Reuter ||
||4:20 - 5:00 ||[[FsTutorial/LongitudinalTutorial_freeview|Longitudinal Tutorial]] ||tutorial ||staff ||
||5:00 - 5:15 ||Question and Answer Session (Answers to online questions [[http://surfer.nmr.mgh.harvard.edu/fswiki/FsTutorial/QuestionAnswers|here]]) ||talk ||staff ||
+||1:20 - 2:00 ||[[FsTutorial/QdecGroupAnalysis_freeview|QDEC Tutorial]] ||tutorial ||staff ||
||2:00 - 2:30  ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/BostonMay2014/fs.roi.ppt|ROI Analysis|&do=get]] ||talk ||Martin Reuter||
||2:30 - 2:50 ||'''break''' || ||
||2:50 - 3:20  ||[[FsTutorial/AnatomicalROI|ROI Analysis Tutorial]] ||tutorial ||staff ||
||3:20 - 3:50|| [[http://surfer.nmr.mgh.harvard.edu/pub/docs/freesurfer.longitudinal.ppt|Longitudinal FreeSurfer|&do=get]] ''see also:'' LongitudinalProcessing ||talk ||Martin Reuter ||
||3:50 - 4:30 ||[[FsTutorial/LongitudinalTutorial_freeview|Longitudinal Tutorial]] ||tutorial ||staff ||
||4:30 - 5:30 || [[http://surfer.nmr.mgh.harvard.edu/pub/docs/fMRI_intro.ppt|Basics of fMRI Analysis|&do=get]] ||talk || Jon Polimeni ||
-Line 58:
+Line 57:
-=== Wednesday, Nov 6th - Diffusion / Multimodal / Longitudinal / Future Directions / Q&A ===
+=== Wednesday, May 7th - fMRI / Multimodal / Longitudinal / Future Directions / Q&A ===
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+Line 62:
-||9:00 - 9:30 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/Nov2013/fs.multimodal-integration.ppt|Multi-Modal Integration, Part 1|&do=get]] ||talk ||Doug Greve ||
||9:30 - 10:00 ||[[FsTutorial/MultiModal_freeview|Multi-Modal Integration Tutorial, Part 1]] ||tutorial ||staff ||
||10:00 - 10:40 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/dmri,fs.ppt|Introduction to Diffusion MRI|&do=get]] ||talk ||Anastasia Yendiki ||
||10:40 - 11:00 ||'''break''' || ||
||11:00 - 11:30 ||[[FsTutorial/Diffusion|Diffusion Processing Tutorial]] ||tutorial ||staff ||
||11:30 - 12:00 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/tracula,fs.ppt|TRActs Constrained by UnderLying Anatomy (TRACULA)|&do=get]] ||talk ||Anastasia Yendiki ||
||12:00 - 1:00 ||'''Lunch''' ||-- ||-- ||
||1:00 - 1:45 ||[[FsTutorial/Tracula|Tracula Tutorial]] ||tutorial ||staff ||
||1:45 - 2:15 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/Nov2013/fs.multimodal-integration.ppt|Multi-Modal Integration, Part 2|&do=get]] ||talk ||Doug Greve ||
||2:15 - 3:00||[[FsTutorial/MultiModal_freeview|Multi-Modal Integration Tutorial, Part 2]] ||tutorial ||staff ||
||3:00 - 3:20 ||'''break''' & [[https://docs.google.com/spreadsheet/viewform?formkey=dDNaOUNxUF90NDJJOWdLNUx3Z2RiMHc6MA|Evaluation]]|| ||
||3:20 - 3:50 ||'''optional technical talk -''' [[http://surfer.nmr.mgh.harvard.edu/pub/docs/mri_acquisition.ppt|MRI Acquisition Methods for Morphometry|&do=get]] ||talk ||Andre van der Kouwe ||
||3:50 - 4:20 ||'''optional technical talk -''' [[http://surfer.nmr.mgh.harvard.edu/pub/docs/FreeSurfer_Course_Apr_2013_Motion_Correction.pdf|Motion-compensated neuroanatomical imaging|&do=get]] ||talk ||Dylan Tisdall ||
||4:20 - 4:45 || '''optional technical talk -''' [[http://surfer.nmr.mgh.harvard.edu/pub/docs/Nov2013/fs.registration.ppt|Registration Methods|&do=get]] || talk || Lilla Zollei ||
||4:45 - 5:15 ||Future Directions  ||talk || Bruce Fischl, Lilla Zollei, Ender Konukoglu ||
+||9:00 - 9:45 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/fsfast.april2011.ppt|FSFAST|&do=get]] ||talk ||Doug Greve ||
||9:45 - 10:00 ||'''break''' || ||
||10:00 - 10:40 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/fsfast.april2011.ppt|FSFAST|&do=get]] ||talk ||Doug Greve ||
||10:40 - 11:40 ||[[FsFastTutorialV5.1_freeview|FSFAST Tutorial]] ||tutorial ||staff ||
||11:40 - 12:40 ||'''Lunch''' ||-- ||-- ||
||12:40 - 1:40 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/BostonMay2014/fs.multimodal-integration.ppt|Multi-Modal Integration|&do=get]] ||talk ||Lilla Zollei ||
||1:40 - 2:55||[[FsTutorial/MultiModal_freeview|Multi-Modal Integration Tutorial]] ||tutorial ||staff ||
||2:55 - 3:15 ||'''break''' & Evaluation|| ||
||3:15 - 3:45 ||Future Directions  ||talk || TBD ||
||3:45 - 4:15||'''optional technical talk -''' [[http://surfer.nmr.mgh.harvard.edu/pub/docs/mri_acquisition.ppt|MRI Acquisition Methods for Morphometry|&do=get]] ||talk ||Andre van der Kouwe ||
||4:15 - 4:45 ||'''optional technical talk -''' [[http://surfer.nmr.mgh.harvard.edu/pub/docs/FreeSurfer_Course_Apr_2013_Motion_Correction.pdf|Motion-compensated neuroanatomical imaging|&do=get]] ||talk ||Dylan Tisdall ||
||4:45 - 5:15 || '''optional technical talk -''' [[http://surfer.nmr.mgh.harvard.edu/pub/docs/fs.registration.ppt|Registration Methods|&do=get]] || talk || Lilla Zollei ||