Diff for "FsTutorial/Oct2010CourseSchedule"

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FreeSurfer Course, October 4 and 5, 2010

MGH, Charlestown Navy Yard, Building 149, Conference Room A

Monday, October 4th - Introduction / Single Subject / Group Analysis

Time	Title	Type	Lecturer
8:00 - 8:30	optional - Unix Tutorial for FreeSurfer Users 1. Surrey, 2. O'Reilly	tutorial	Allison Stevens
8:30 - 9:00	optional - Intro to FreeSurfer Jargon	talk	Allison Stevens
8:30 - 9:00	Course Registration	sign-in	staff
9:00 - 9:30	Introduction to Freesurfer	talk	Bruce Fischl
9:30 - 10:00	Accuracy, Reliability and Validation	talk	David Salat
10:00 - 11:00	Analyzing the Individual Subject	talk	Doug Greve
11:00 - 11:15	break
11:15 - 11:45	Tkmedit/Tksurfer demonstration	demo	Doug Greve
11:45 - 12:15	Interaction with Individual Subject Data Tutorial	tutorial	staff
12:15 - 1:15	Lunch	--	--
12:30 - 1:00	Optional Lunch Talk- MRI Acquisition Methods for Morphometry	talk	Andre van der Kouwe
1:15 - 2:00	FreeSurfer Applications	talk	David Salat
2:00 - 2:30	Surface-based Smoothing/Surface-based Registration	talk	Doug Greve
2:30 - 2:45	break
2:45 - 3:30	Group Analysis / GLM / Multiple Comparisons	talk	Mert Sabuncu
3:30 - 4:30	Group Analysis / Multiple Comparisons - mri_glmfit Tutorial	tutorial	staff
4:30 - 4:45	QDEC demonstration	demo	Nick Schmansky
4:45 - 5:30	Group Analysis - qdec Tutorial	tutorial	staff
5:30 -	optional - FreeSurfer Installation on Personal Laptops	one-on-one	Nick Schmansky
5:30 -	optional - Start Processing Your Own Data	one-on-one	Allison Stevens

Tuesday, October 5th - ROIs / Troubleshooting / Multi-Modal / Q&A / Future Directions

Time	Title	Type	Lecturer
9:00 - 10:00	ROI Analysis	talk	Doug Greve
10:00 - 10:30	ROI Analysis Tutorial	tutorial	staff
10:30 - 11:00	Longitudinal FreeSurfer see also: LongitudinalProcessing	talk	Martin Reuter
11:00 - 11:15	break
11:15 - 11:45	Failure Modes	talk	Bruce Fischl
11:45 - 12:45	Troubleshooting Demonstration, Troubleshooting Tutorial	tutorial	staff, Allison
12:45 - 1:45	Lunch	--	--
12:45 - 1:15	Optional Lunch Talk- Quality Checking a Recon	demo	Allison Stevens
1:45 - 3:00	Multi-Modal Integration	talk	Doug Greve
3:00 - 3:45	Multi-Modal Integration Tutorial	tutorial	staff
3:45 - 4:00	break
4:00 - 4:20	Combined Volume and Surface Registration	talk	Lilla Zollei
4:20 - 5:30	Future Directions of FreeSurfer:
4:20 - 4:40	Motion-compensated neuroanatomical imaging	talk	Dylan Tisdall
4:40 - 5:10	Inferring architectonic boundaries from in-vivo MRI	talk	Bruce Fischl
5:10- 5:30	TRActs Constrained by UnderLying Anatomy (TRACULA)	talk	Lilla Zollei
5:30 - 6:00	Question and Answer Session, FsQuiz	talk	staff

FsTutorial/Oct2010CourseSchedule (last edited 2010-10-05 16:28:23 by AllisonStevens)

-  ⇤ ← Revision 1 as of 2010-07-28 19:44:03 → 
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+   ← Revision 15 as of 2010-09-28 13:47:07 → ⇥
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-=== Monday, October 4th - Introduction / Single Subject / ROIs /Group Analysis ===
+=== Monday, October 4th - Introduction / Single Subject / Group Analysis ===
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-|| 9:30 - 10:30 || [[http://surfer.nmr.mgh.harvard.edu/pub/docs/fsrecon.ppt|Analyzing the Individual Subject|&do=get]] || talk|| Bruce Fischl ||
|| 10:30 - 10:45 || '''break''' || || ||
|| 10:45 - 11:15  || Tkmedit/Tksurfer demonstration || demo || Doug Greve ||
|| 11:15 - 11:45 || [[FsTutorial/OutputData|Interaction with Individual Subject Data Tutorial]] || tutorial || staff ||
|| 11:45 - 12:15 || [[http://surfer.nmr.mgh.harvard.edu/pub/docs/fs.surface-based-analysis.ppt|Surface-based Smoothing/Surface-based Registration|&do=get]] || talk || Doug Greve ||
|| 12:15 - 1:15 || Lunch || -- || -- ||
|| 1:15 - 2:15 || [[http://surfer.nmr.mgh.harvard.edu/pub/docs/fs.roi.ppt|ROI Analysis|&do=get]] || talk || Doug Greve ||
|| 2:15 - 2:45 || [[FsTutorial/AnatomicalROI|ROI Analysis Tutorial]] || tutorial || staff ||
|| 2:45 - 3:00 || '''break''' || || ||
|| 3:00 - 3:45 || [[http://surfer.nmr.mgh.harvard.edu/pub/docs/freesurfer.groupanalysis.ppt|Group Analysis / GLM / Multiple Comparisons|&do=get]] || talk || Mert Sabuncu ||
|| 3:45 - 4:45 || [[FsTutorial/GroupAnalysis|Group Analysis / Multiple Comparisons - mri_glmfit Tutorial]] || tutorial || staff ||
|| 4:45 - 5:00 || QDEC demonstration || demo || Nick Schmansky ||
|| 5:00 - 5:45 || [[FsTutorial/QdecGroupAnalysis|Group Analysis - qdec Tutorial]] || tutorial || staff ||
|| 5:45 - || '''optional -''' [[DownloadAndInstall|FreeSurfer Installation on Personal Laptops]] || one-on-one || Nick Schmansky  ||
|| 5:45 - || '''optional -''' [[http://surfer.nmr.mgh.harvard.edu/pub/docs/runningyourdata.ppt|Start Processing Your Own Data|&do=get]]|| one-on-one || Allison Stevens ||
+|| 9:30 - 10:00 || [[http://surfer.nmr.mgh.harvard.edu/pub/docs/freesurfer.reliability.ppt|Accuracy, Reliability and Validation|&do=get]] || talk || David Salat ||
|| 10:00 - 11:00 || [[http://surfer.nmr.mgh.harvard.edu/pub/docs/fsrecon.ppt|Analyzing the Individual Subject|&do=get]] || talk || Doug Greve ||
|| 11:00 - 11:15 || '''break''' || || ||
|| 11:15 - 11:45  || Tkmedit/Tksurfer demonstration || demo || Doug Greve ||
|| 11:45 - 12:15 || [[FsTutorial/OutputData|Interaction with Individual Subject Data Tutorial]] || tutorial || staff ||
|| 12:15 - 1:15 || '''Lunch''' || -- || -- ||
|| ''12:30 - 1:00'' || ''Optional Lunch Talk''- ''[[http://surfer.nmr.mgh.harvard.edu/pub/docs/mri_acquisition.ppt|MRI Acquisition Methods for Morphometry|&do=get]]'' || ''talk'' || ''Andre van der Kouwe''||
|| 1:15 - 2:00 || [[http://surfer.nmr.mgh.harvard.edu/pub/docs/freesurfer.applications.ppt|FreeSurfer Applications|&do=get]] || talk || David Salat ||
|| 2:00 - 2:30 || [[http://surfer.nmr.mgh.harvard.edu/pub/docs/fs.surface-based-analysis.ppt|Surface-based Smoothing/Surface-based Registration|&do=get]] || talk || Doug Greve ||
|| 2:30 - 2:45 || '''break''' || || ||
|| 2:45 - 3:30 || [[http://surfer.nmr.mgh.harvard.edu/pub/docs/freesurfer.groupanalysis.ppt|Group Analysis / GLM / Multiple Comparisons|&do=get]] || talk || Mert Sabuncu ||
|| 3:30 - 4:30 || [[FsTutorial/GroupAnalysis|Group Analysis / Multiple Comparisons - mri_glmfit Tutorial]] || tutorial || staff ||
|| 4:30 - 4:45 || QDEC demonstration || demo || Nick Schmansky ||
|| 4:45 - 5:30 || [[FsTutorial/QdecGroupAnalysis|Group Analysis - qdec Tutorial]] || tutorial || staff ||
|| 5:30 - || '''optional -''' [[DownloadAndInstall|FreeSurfer Installation on Personal Laptops]] || one-on-one || Nick Schmansky  ||
|| 5:30 - || '''optional -''' [[http://surfer.nmr.mgh.harvard.edu/pub/docs/runningyourdata.ppt|Start Processing Your Own Data|&do=get]]|| one-on-one || Allison Stevens ||
-Line 28:
+Line 29:
-=== Tuesday, October 5th - Troubleshooting / Multi-Modal / Q&A / Future Directions ===
+=== Tuesday, October 5th - ROIs / Troubleshooting / Multi-Modal / Q&A / Future Directions ===
-Line 31:
+Line 32:
-|| 9:00 - 9:30 || [[http://surfer.nmr.mgh.harvard.edu/pub/docs/freesurfer.reliability.ppt|Accuracy, Reliability and Validation|&do=get]] || talk || David Salat ||
|| 9:30 - 10:00 || [[http://surfer.nmr.mgh.harvard.edu/pub/docs/freesurfer.longitudinal.ppt|Longitudinal FreeSurfer|&do=get]] ''see also:'' LongitudinalProcessing|| talk || Martin Reuter ||
|| 10:00 - 10:45 || [[http://surfer.nmr.mgh.harvard.edu/pub/docs/freesurfer.applications.ppt|FreeSurfer Applications|&do=get]] || talk || David Salat ||
|| 10:45 - 11:00 || '''break''' || || ||
|| 11:00 - 11:30 || [[http://surfer.nmr.mgh.harvard.edu/pub/docs/freesurfer.failure_modes.ppt|Failure Modes|&do=get]] || talk || Bruce Fischl||
|| 11:30 - 12:30 || Troubleshooting Demonstration, [[FsTutorial/TroubleshootingData|Troubleshooting Tutorial]]|| tutorial || staff, Allison ||
|| 12:30 - 1:00 || '''Working lunch''' Optional demo - Quality Checking a Recon || demo || Allison Stevens ||
|| 1:00 - 1:30 || Lunch || -- || -- ||
|| 1:30 - 2:45 || [[http://surfer.nmr.mgh.harvard.edu/pub/docs/fs.multimodal-integration.ppt|Multi-Modal Integration|&do=get]] || talk || Doug Greve ||
|| 2:45 - 3:45 || [[FsTutorial/MultiModal|Multi-Modal Integration Tutorial]] || tutorial || staff ||
+|| 9:00 - 10:00 || [[http://surfer.nmr.mgh.harvard.edu/pub/docs/fs.roi.ppt|ROI Analysis|&do=get]] || talk || Doug Greve ||
|| 10:00 - 10:30 || [[FsTutorial/AnatomicalROI|ROI Analysis Tutorial]] || tutorial || staff ||
|| 10:30 - 11:00 || [[http://surfer.nmr.mgh.harvard.edu/pub/docs/freesurfer.longitudinal.ppt|Longitudinal FreeSurfer|&do=get]] ''see also:'' LongitudinalProcessing|| talk || Martin Reuter ||
|| 11:00 - 11:15 || '''break''' || || ||
|| 11:15 - 11:45 || [[http://surfer.nmr.mgh.harvard.edu/pub/docs/freesurfer.failure_modes.ppt|Failure Modes|&do=get]] || talk || Bruce Fischl||
|| 11:45 - 12:45 || Troubleshooting Demonstration, [[FsTutorial/TroubleshootingData|Troubleshooting Tutorial]]|| tutorial || staff, Allison ||
|| 12:45 - 1:45 || '''Lunch''' || -- || -- ||
|| ''12:45 - 1:15'' || ''Optional Lunch Talk- Quality Checking a Recon'' || ''demo'' || ''Allison Stevens'' ||
|| 1:45 - 3:00 || [[http://surfer.nmr.mgh.harvard.edu/pub/docs/fs.multimodal-integration.ppt|Multi-Modal Integration|&do=get]] || talk || Doug Greve ||
|| 3:00 - 3:45 || [[FsTutorial/MultiModal|Multi-Modal Integration Tutorial]] || tutorial || staff ||
-Line 42:
+Line 43:
-|| 4:00 - 5:00 || Future Directions of !FreeSurfer: || || ||
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-|| 4:20 - 4:40|| [[http://surfer.nmr.mgh.harvard.edu/pub/docs/tracula,fs.ppt|TRActs Constrained by UnderLying Anatomy (TRACULA)|&do=get]] || talk || Anastasia Yendiki ||
|| 4:40 - 5:00 || [[http://surfer.nmr.mgh.harvard.edu/pub/docs/freesurfer.inferring_architectonics.ppt|Inferring architectonic boundaries from in-vivo MRI|&do=get]] || talk || Bruce Fischl ||
|| 5:00 - 5:30 || Question and Answer Session, FsQuiz || talk || staff ||
+|| 4:20 - 5:30 || Future Directions of !FreeSurfer: || || ||
|| 4:20 - 4:40|| [[http://surfer.nmr.mgh.harvard.edu/pub/docs/tisdall_moco.pdf|Motion-compensated neuroanatomical imaging|&do=get]] || talk || Dylan Tisdall ||
|| 4:40 - 5:10 || [[http://surfer.nmr.mgh.harvard.edu/pub/docs/freesurfer.inferring_architectonics.ppt|Inferring architectonic boundaries from in-vivo MRI|&do=get]] || talk || Bruce Fischl ||
|| 5:10- 5:30|| [[http://surfer.nmr.mgh.harvard.edu/pub/docs/tracula,fs.ppt|TRActs Constrained by UnderLying Anatomy (TRACULA)|&do=get]] || talk || Lilla Zollei ||
|| 5:30 - 6:00 || Question and Answer Session, FsQuiz || talk || staff ||