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|| 9:30 - 10:30 || [[http://surfer.nmr.mgh.harvard.edu/pub/docs/fsrecon.ppt|Analyzing the Individual Subject|&do=get]] || talk|| Bruce Fischl ||
|| 10:30 - 10:45 || '''break''' || || ||
|| 10:45 - 11:15 || Tkmedit/Tksurfer demonstration || demo || Doug Greve ||
|| 11:15 - 11:45 || [[FsTutorial/OutputData|Interaction with Individual Subject Data Tutorial]] || tutorial || staff ||
|| 11:45 - 12:15 || [[http://surfer.nmr.mgh.harvard.edu/pub/docs/fs.surface-based-analysis.ppt|Surface-based Smoothing/Surface-based Registration|&do=get]] || talk || Doug Greve ||
|| 9:30 - 10:00 || [[http://surfer.nmr.mgh.harvard.edu/pub/docs/freesurfer.reliability.ppt|Accuracy, Reliability and Validation|&do=get]] || talk || David Salat ||
|| 10:00 - 11:00 || [[http://surfer.nmr.mgh.harvard.edu/pub/docs/f
srecon.ppt|Analyzing the Individual Subject|&do=get]] || talk || Bruce Fischl ||
|| 11:00 - 11:15 || '''break''' || || ||
|| 11:15 - 11:45 || Tkmedit/Tksurfer demonstration || demo || Doug Greve ||
|| 11:45 - 12:15 || [[FsTutorial/OutputData|Interaction with Individual Subject Data Tutorial]] || tutorial || staff ||
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|| 9:00 - 9:30 || [[http://surfer.nmr.mgh.harvard.edu/pub/docs/freesurfer.reliability.ppt|Accuracy, Reliability and Validation|&do=get]] || talk || David Salat ||
|| 10:00 - 10:45 || [[http://surfer.nmr.mgh.harvard.edu/pub/docs/freesurfer.applications.ppt|FreeSurfer Applications|&do=get]] || talk || David Salat ||
|| 2:45 - 3:00 || '''break''' || || ||
||
3:00 - 3:45 || [[http://surfer.nmr.mgh.harvard.edu/pub/docs/freesurfer.groupanalysis.ppt|Group Analysis / GLM / Multiple Comparisons|&do=get]] || talk || Mert Sabuncu ||
|| 3:45 - 4:45 || [[FsTutorial/GroupAnalysis|Group Analysis / Multiple Comparisons - mri_glmfit Tutorial]] || tutorial || staff ||
|| 4:45 - 5:00
|| QDEC demonstration || demo || Nick Schmansky ||
|| 5:00 - 5:45 || [[FsTutorial/QdecGroupAnalysis|Group Analysis - qdec Tutorial]] || tutorial || staff ||
|| 5:45 - || '''optional -''' [[DownloadAndInstall|FreeSurfer Installation on Personal Laptops]] || one-on-one || Nick Schmansky ||
|| 5:45 - || '''optional -''' [[http://surfer.nmr.mgh.harvard.edu/pub/docs/runningyourdata.ppt|Start Processing Your Own Data|&do=get]]|| one-on-one || Allison Stevens ||
|| 1:15 - 2:00 || [[http://surfer.nmr.mgh.harvard.edu/pub/docs/freesurfer.applications.ppt|FreeSurfer Applications|&do=get]] || talk || David Salat ||
|| 2:00 - 2
:30 || [[http://surfer.nmr.mgh.harvard.edu/pub/docs/fs.surface-based-analysis.ppt|Surface-based Smoothing/Surface-based Registration|&do=get]] || talk || Doug Greve ||
|| 2:30 - 2:45 || '''break''' || || ||
|| 2:45 - 3:30 || [[http://surfer.nmr.mgh.harvard.edu/pub/docs/freesurfer.groupanalysis.ppt|Group Analysis / GLM / Multiple Comparisons|&do=get]] || talk || Mert Sabuncu ||
|| 3:30 - 4:30 || [[FsTutorial/GroupAnalysis|Group Analysis / Multiple Comparisons - mri_glmfit Tutorial]] || tutorial || staff ||
|| 4:30 - 4:
45 || QDEC demonstration || demo || Nick Schmansky ||
|| 4:45 - 5:30 || [[FsTutorial/QdecGroupAnalysis|Group Analysis - qdec Tutorial]] || tutorial || staff ||
|| 5:30 - || '''optional -''' [[DownloadAndInstall|FreeSurfer Installation on Personal Laptops]] || one-on-one || Nick Schmansky ||
|| 5:30 - || '''optional -''' [[http://surfer.nmr.mgh.harvard.edu/pub/docs/runningyourdata.ppt|Start Processing Your Own Data|&do=get]]|| one-on-one || Allison Stevens ||

FreeSurfer Course, October 4 and 5, 2010

MGH, Charlestown Navy Yard, Building 149, Conference Room A

Monday, October 4th - Introduction / Single Subject / ROIs /Group Analysis

Time

Title

Type

Lecturer

8:00 - 8:30

optional - Unix Tutorial for FreeSurfer Users 1. Surrey, 2. O'Reilly

tutorial

Allison Stevens

8:30 - 9:00

optional - Intro to FreeSurfer Jargon

talk

Allison Stevens

8:30 - 9:00

Course Registration

sign-in

staff

9:00 - 9:30

Introduction to Freesurfer

talk

Bruce Fischl

9:30 - 10:00

Accuracy, Reliability and Validation

talk

David Salat

10:00 - 11:00

Analyzing the Individual Subject

talk

Bruce Fischl

11:00 - 11:15

break

11:15 - 11:45

Tkmedit/Tksurfer demonstration

demo

Doug Greve

11:45 - 12:15

Interaction with Individual Subject Data Tutorial

tutorial

staff

12:15 - 12:45

Working lunch Optional talk - MRI Acquisition Methods for Morphometry

talk

Andre van der Kouwe

12:45 - 1:15

Lunch

--

--

1:15 - 2:00

FreeSurfer Applications

talk

David Salat

2:00 - 2:30

Surface-based Smoothing/Surface-based Registration

talk

Doug Greve

2:30 - 2:45

break

2:45 - 3:30

Group Analysis / GLM / Multiple Comparisons

talk

Mert Sabuncu

3:30 - 4:30

Group Analysis / Multiple Comparisons - mri_glmfit Tutorial

tutorial

staff

4:30 - 4:45

QDEC demonstration

demo

Nick Schmansky

4:45 - 5:30

Group Analysis - qdec Tutorial

tutorial

staff

5:30 -

optional - FreeSurfer Installation on Personal Laptops

one-on-one

Nick Schmansky

5:30 -

optional - Start Processing Your Own Data

one-on-one

Allison Stevens

Tuesday, October 5th - Troubleshooting / Multi-Modal / Q&A / Future Directions

Time

Title

Type

Lecturer

9:00 - 10:00

ROI Analysis

talk

Doug Greve

10:00 - 10:30

ROI Analysis Tutorial

tutorial

staff

10:30 - 11:00

Longitudinal FreeSurfer see also: LongitudinalProcessing

talk

Martin Reuter

11:00 - 11:15

break

11:15 - 11:45

Failure Modes

talk

Bruce Fischl

11:45 - 12:45

Troubleshooting Demonstration, Troubleshooting Tutorial

tutorial

staff, Allison

12:45 - 1:15

Working lunch Optional demo - Quality Checking a Recon

demo

Allison Stevens

1:15 - 1:45

Lunch

--

--

1:45 - 3:00

Multi-Modal Integration

talk

Doug Greve

3:00 - 3:45

Multi-Modal Integration Tutorial

tutorial

staff

3:45 - 4:00

break

4:00 - 4:30

Combined Volume and Surface Registration

talk

Lilla Zollei

4:30 - 5:30

Future Directions of FreeSurfer:

4:30 - 4:50

TRActs Constrained by UnderLying Anatomy (TRACULA)

talk

Anastasia Yendiki

4:50 - 5:10

Motion-compensated neuroanatomical imaging

talk

Dylan Tisdall

5:10 - 5:20

Inferring architectonic boundaries from in-vivo MRI

talk

Bruce Fischl

5:20 - 5:50

Question and Answer Session, FsQuiz

talk

staff

FsTutorial/Oct2010CourseSchedule (last edited 2010-10-05 16:28:23 by AllisonStevens)