Diff for "FsTutorial/ToursMay2016CourseSchedule"

Differences between revisions 5 and 6

FreeSurfer Course, September 28 - Oct 1

7:30 - 9:30am Registration Desk Open

Monday, September 28th - Introduction / Single Subject Analysis /Troubleshooting

Time	Title	Type	Lecturer
8:30 - 9:00	optional - Unix Tutorial for FreeSurfer Users	talk/tutorial
9:00 - 9:15	optional - Intro to FreeSurfer Jargon	talk
9:15 - 9:30	break
9:30 - 10:00	Introduction to Freesurfer	talk
10:00 - 11:10	Analyzing the Individual Subject	talk
11:10 - 11:30	break
11:30 - 12:10	Surface-based Analysis: Intersubject Smoothing & Registration	talk
12:10 - 1:10	Lunch (Suggestions for where to eat)	--	--
1:10 - 1:30	Freeview demonstration	demo
1:30 - 2:30	Interaction with Individual Subject Data Tutorial	tutorial	staff
2:30 - 3:00	FreeSurfer Troubleshooting	talk
3:00 - 3:20	break
3:20 - 3:50	Quality Checking a Recon	demo	do shortened version
3:50 - 4:50	Troubleshooting Tutorial	tutorial	staff
4:50 - 5:30	FibreAtlas Project (optional)	talk	Christophe Destrieux

Tuesday, September 29th - Diffusion / Group Analysis / ROI Analysis / Longitudinal / fMRI

Time	Title	Type	Lecturer
9:00 - 10:00	Group Analysis	talk
10:00 - 10:20	QDEC demonstration	demo
10:20 - 10:40	break
10:40 - 11:10	QDEC Tutorial	tutorial	staff
11:10 - 12:00	OCT talk (optional)	talk
12:00 - 1:00	Lunch	--	--
1:00 - 1:30	ROI talk	talk
1:30 - 2:00	ROI Analysis Tutorial	tutorial	staff
2:00 - 2:20	break
2:20 - 3:20	Multi-Modal Integration	talk
3:20 - 4:20	Multi-Modal Integration Tutorial	tutorial	staff
4:20 - 5:00	Introduction to Diffusion MRI	talk

2:25 - 2:45	break & Evaluation
2:45 - 3:35	TRActs Constrained by UnderLying Anatomy (TRACULA)	talk
3:35 - 4:20	Tracula Tutorial	tutorial	staff
1:10 - 2:25	Fibre Atlas exvivo talk	talk
4:50 - 5:05	Question and Answer Session (Answers to online questions here), FsQuiz	talk	staff

-Deletions are marked like this.
+Additions are marked like this.
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-||11:30 - 12:10 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/fs.surface-based-analysis.ppt|Surface-based Analysis: Intersubject Smoothing & Registration]] ||talk ||necessary? ||
+||11:30 - 12:10 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/fs.surface-based-analysis.ppt|Surface-based Analysis: Intersubject Smoothing & Registration]] ||talk || ||
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-||4:50 - 5:30 ||FibreAtlas Project||talk ||Christophe Destrieux ||
+||4:50 - 5:30 ||FibreAtlas Project (optional)||talk ||Christophe Destrieux ||
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-||9:40 - 10:20 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/BostonMay2014/freesurfer.groupanalysis.pdf|Group Analysis]] ||talk ||include if have time ||
+||9:00 - 10:00 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/BostonMay2014/freesurfer.groupanalysis.pdf|Group Analysis]] ||talk ||||

||10:00 - 10:20 ||QDEC demonstration ||demo ||||
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-||10:40 - 11:20 ||[[FsTutorial/GroupAnalysis|Group Analysis Tutorial]] ||tutorial ||staff ||

||11:20 - 11:40 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/BostonMay2014/freesurfer.multipecomparisons.ppt|Multiple Comparisons]] ||talk || ||

||11:40 - 12:00 ||QDEC demonstration ||demo ||||
+||10:40 - 11:10 ||[[FsTutorial/QdecGroupAnalysis_freeview|QDEC Tutorial]] ||tutorial ||staff ||

||11:10 - 12:00 || OCT talk (optional) ||talk ||||
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+Line 33:
-||1:00 - 1:20 ||[[http://surfer.nmr.mgh.harvard.edu/fswiki/FsTutorial/GroupAnalysis#ClusterwiseCorrectionforMultipleComparisons|Multiple Comparisons Tutorial]] ||tutorial ||staff ||

||1:20 - 2:00 ||[[FsTutorial/QdecGroupAnalysis_freeview|QDEC Tutorial]] ||tutorial ||staff ||

||2:00 - 2:30 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/BostonMay2014/fs.roi.ppt|ROI Analysis]] ||talk || ||

||2:30 - 2:50 ||'''break''' || ||

||2:50 - 3:20 ||[[FsTutorial/AnatomicalROI|ROI Analysis Tutorial]] ||tutorial ||staff ||

||3:20 - 3:50 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/freesurfer.longitudinal.ppt|Longitudinal FreeSurfer]] see also:'' LongitudinalProcessing '' ||talk ||lower priority, include if we can ||

||3:50 - 4:30 ||[[FsTutorial/LongitudinalTutorial_freeview|Longitudinal Tutorial]] ||tutorial ||staff ||
+||1:00 - 1:30 ||ROI talk ||talk ||||

||1:30 - 2:00 ||[[FsTutorial/AnatomicalROI|ROI Analysis Tutorial]] ||tutorial ||staff ||

||2:00 - 2:20 ||'''break''' || ||

||2:20 - 3:20 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/fs.multimodal-integration.dti.ppt|Multi-Modal Integration]] ||talk || ||

||3:20 - 4:20 ||[[FsTutorial/MultiModal_freeview|Multi-Modal Integration Tutorial]] ||tutorial ||staff ||

||4:20 - 5:00 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/dmri,fs.ppt|Introduction to Diffusion MRI]] ||talk || ||
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-==== Wednesday, September 30th - fMRI / Multimodal /  Diffusion / Future Directions / Q&A ====

##[[https://docs.google.com/spreadsheet/viewform?formkey=dGZKM24xb1NpRDRJOHhwdmxCUm9CbFE6MA |The Course Evaluation has been posted. ]] Please feel free to start filling it out!

||'''Time''' ||'''Title''' ||'''Type''' ||'''Lecturer''' ||

||8:30 - 9:00 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/fs.multimodal-integration.dti.ppt|Multi-Modal Integration, Part 1]] ||talk || ||

||9:00 - 9:40 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/dmri,fs.ppt|Introduction to Diffusion MRI]] ||talk || ||

||9:45 - 10:00 ||'''break''' || ||

||11:40 - 12:40 ||'''Lunch''' ||-- ||-- ||

||12:40 - 1:10 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/BostonMay2014/fs.multimodal-integration.ppt|Multi-Modal Integration, Part 2]] ||talk || ||

||1:10 - 2:25 ||[[FsTutorial/MultiModal_freeview|Multi-Modal Integration Tutorial]] ||tutorial ||staff ||
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-||4:20 - 4:50 ||Future Directions ||talk ||TBD ||
+||1:10 - 2:25 ||Fibre Atlas exvivo talk ||talk || ||