FreeSurfer Course, September 28 - Oct 1

7:30 - 9:30am Registration Desk Open

Monday, September 28th - Introduction / Single Subject Analysis /Troubleshooting

Time

Title

Type

Lecturer

8:30 - 9:00

optional - Unix Tutorial for FreeSurfer Users

talk/tutorial

Allison Moreau

9:00 - 9:15

optional - Intro to FreeSurfer Jargon

talk

Allison Moreau & Lilla Zollei

9:15 - 9:30

break

9:30 - 10:00

Introduction to Freesurfer

talk

Bruce Fischl

10:00 - 11:10

Analyzing the Individual Subject

talk

Doug Greve

11:10 - 11:30

break

11:30 - 12:10

Surface-based Analysis: Intersubject Smoothing & Registration

talk

Doug Greve

12:10 - 1:10

Lunch (Suggestions for where to eat)

--

--

1:10 - 1:30

Freeview demonstration

demo

Lee Tirrell

1:30 - 2:30

Interaction with Individual Subject Data Tutorial

tutorial

staff

2:30 - 3:00

FreeSurfer Troubleshooting

talk

Bruce Fischl

3:00 - 3:20

break

3:20 - 4:00

Quality Checking a Recon

demo

Ani Varjabedian

4:00 - 5:00

Troubleshooting Tutorial

tutorial

staff

5:00 - 5:15

Question and Answer Session (Answers to online questions here)

talk

staff

Tuesday, September 29th - Diffusion / Group Analysis / ROI Analysis / Longitudinal / fMRI

Time

Title

Type

Lecturer

9:00 - 9:40

Introduction to Diffusion MRI

talk

Anastasia Yendiki

9:40 - 10:20

Group Analysis

talk

Emily Lindemer

10:20 - 10:40

break

10:40 - 11:20

Group Analysis Tutorial

tutorial

staff

11:20 - 11:40

Multiple Comparisons

talk

Martin Reuter

11:40 - 12:00

QDEC demonstration

demo

Martin Reuter

12:00 - 1:00

Lunch

--

--

1:00 - 1:20

Multiple Comparisons Tutorial

tutorial

staff

1:20 - 2:00

QDEC Tutorial

tutorial

staff

2:00 - 2:30

ROI Analysis

talk

Doug Greve

2:30 - 2:50

break

2:50 - 3:20

ROI Analysis Tutorial

tutorial

staff

3:20 - 3:50

Longitudinal FreeSurfer see also: LongitudinalProcessing

talk

lower priority

3:50 - 4:30

Longitudinal Tutorial

tutorial

staff

4:30 - 5:30

Basics of fMRI Analysis

talk

Jon Polimeni

5:30 - 5:45

Question and Answer Session (Answers to online questions here)

talk

staff

Wednesday, September 30th - fMRI / Multimodal / Diffusion / Future Directions / Q&A

Time

Title

Type

Lecturer

8:30 - 9:00

Multi-Modal Integration, Part 1

talk

Doug Greve

9:00 - 9:45

FSFAST

talk

Doug Greve

9:45 - 10:00

break

10:00 - 10:40

FSFAST

talk

Doug Greve

10:40 - 11:40

FSFAST Tutorial

tutorial

staff

11:40 - 12:40

Lunch

--

--

12:40 - 1:10

Multi-Modal Integration, Part 2

talk

Lilla Zollei

1:10 - 2:25

Multi-Modal Integration Tutorial

tutorial

staff

2:25 - 2:45

break & Evaluation

2:45 - 3:35

TRActs Constrained by UnderLying Anatomy (TRACULA)

talk

Anastasia Yendiki

3:35 - 4:20

Tracula Tutorial

tutorial

staff

4:20 - 4:50

Future Directions

talk

TBD

4:50 - 5:05

Question and Answer Session (Answers to online questions here), FsQuiz

talk

staff

Thursday, October 1st - Technical talks

Time

Title

Type

Lecturer

9:00 - 9:30

optional technical talk - Registration Methods

talk

Lilla Zollei

10:50 - 11:20

optional technical talk - MRI Acquisition Methods for Morphometry

talk

Andre van der Kouwe

11:20 - 11:50

optional technical talk - Motion-compensated neuroanatomical imaging

talk

Dylan Tisdall