Differences between revisions 37 and 38
Deletions are marked like this. Additions are marked like this.
Line 9: Line 9:
||<^>...RegTemplateParcAtlas/TemplateCreate||Creating a '''template''' for spherical registration (mris_make_template)||
||<^>...RegTemplateParcAtlas/TemplateUse||Using a '''template''' (mris_register)||
||<^>...RegTemplateParcAtlas/AtlasCreate||Creating an '''atlas''' for parcellation (mris_ca_train) ||
||<^>...RegTemplateParcAtlas/AtlasUse||Parcellation by applying an '''atlas''' (mris_ca_label)||
||<^> || ||

GrahamWideman pages

Useful pages

Link

Description

ReconAllFilesVsSteps

Cross-reference table showing files read and written by each step in recon-all

LabelsClutsAnnotationFiles

Article on labels, colortables and annotations

RegTemplateParcAtlas

Overview: BR --Creating and using "tif" templates for spherical registration of surfacesBR --Creating and using GCA atlas files for parcellation

QaImageScripts

Sample scripts to produce "screencaps" en masse from tksurfer and tkmedit for QA

Commands

(... for which I wrote some documentation)

["mris_curvature_stats"]

["mris_label2annot"]

["mri_annotation2label"]

["mris_make_template"]

["mri_make_template"]

["mris_register"]

Test Pages

GrahamWideman (last edited 2013-10-10 03:40:06 by GrahamWideman)