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| == Annotations == |
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= Synopsis = command argA argB -flag1 arg1 -flag2 arg2 [-flag3 arg3] [-flag4 arg4] |
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= Arguments = == Positional Arguments == || argA || brief description || detailed description (eg, help file information) || || argB || brief description || detailed description (eg, help file information) || == Required Flagged Arguments == || -flag1 arg1 || brief description || detailed description (eg, help file information) || || -flag2 arg2 || brief description || detailed description (eg, help file information) || == Optional Flagged Arguments == || -flag3 arg3 || brief description ||detailed description (eg, help file information) || || -flag4 arg4 || brief description ||detailed description (eg, help file information) || = Outputs = || volume1 || description || || volume2 || description || = Description = description = Examples = == Example 1 == command foo -i f -o out description == Example 2 == command foo -i f -o out -f fvalue description = Bugs = None = See Also = ["othercommand1"], ["othercommand2"] = Links = FreeSurfer, FsFast = Methods Description = {{{ description description }}} = References = ["References/Lastname###"] = Reporting Bugs = Report bugs to <analysis-bugs@nmr.mgh.harvard.edu> = Author/s = JaneSmith |
= Document Author/s = GrahamWideman |
Index TableOfContents
Labels, Color Lookup Tables and Annotation Files
This page discusses the basic concepts of FreeSurfer files that relate to identifying regions-of-interest for surfaces and volumes.
- Labels:
- Color Lookup Tables
- Annotation Files
Details
Labels
x
Color Lookup Tables
x
Annotations
x
Related pages
AnnotFiles : Some brief end-user notes on annotation files, plus MatLab and C developer notes.
- ["mris_label2annot"] : Documentation for the command-line program that amalgamates label files (plus optional color lookup table file) into a single annotation file.
- ["mri_annotation2label"] : Documentation for the command-line program that breaks an annotation file into individual label files
EditingLabels : Pointers to a couple of pages about labels
TkSurferGuide/TkSurferWorkingWithData/TkSurferLabel : Working with labels