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FsTutorial/QuestionAnswers . . . 6 matches
...rs in the atlas. It could still help to improve the full hippocampus segmentation. MartinReuter ----- '''Question: What is the difference between voxel-based morphometry and the ...

45.5k - rev: 81 (current) last modified: 2018-10-04 16:22:01

LongitudinalChangeLog . . . 4 matches
...e time points id's) No modifications to the data flow in the base or long stream. MartinReuter == FS Version 4.5 == Improvements to the new longitudinal stream (modified base s...

5.1k - rev: 29 (current) last modified: 2018-06-21 15:06:52

FsTutorial/QuestionAnswersApril2013 . . . 4 matches
...lip) etc. Usually NIFTI should be fine (assuming the header did not get corrupted). MartinReuter --------------------------------------------------------- '''Can you use skull st...

7.9k - rev: 13 (current) last modified: 2013-11-03 11:32:23

mri_robust_template . . . 1 match
...://reuter.mit.edu/papers/reuter-bias11.pdf Also see [[FreeSurferMethodsCitation]]. = Reporting Bugs = Report bugs to <freesurfer@nmr.mgh.harvard.edu> = Author/s = MartinReuter...

6.0k - rev: 13 (current) last modified: 2020-05-28 10:41:38

mri_robust_register . . . 1 match
...tp://reuter.mit.edu/papers/reuter-long12.pdf Also see [[FreeSurferMethodsCitation]]. = Reporting Bugs = Report bugs to <freesurfer@nmr.mgh.harvard.edu> = Author/s = MartinReuter...

9.6k - rev: 17 (current) last modified: 2014-01-31 22:36:30

LongitudinalTwoStageModel . . . 1 match
...-pc1.stack.txt cat testretest.aseg-pc1/sig.table.dat }}} See the [[ FsTutorial/GroupAnalysis | Group Analysis Tutorial ]] for more details on {{{mri_glmfit}}}. ---- MartinReuter...

10.9k - rev: 19 (current) last modified: 2021-06-01 15:13:03

LongitudinalStatistics . . . 1 match
... ready for the LinearMixedEffectsModels (usually you would do a smoothing step with mri_surf2surf after the mris_preproc is finished, see the LME description). ---- MartinReuter...

11.1k - rev: 46 (current) last modified: 2018-07-25 12:06:32

LongitudinalProcessing45 . . . 1 match
... === Cortical Ribbon Mask (-cortribbon) === No change. === Add Parcellation to ASeg (-aparc2aseg) === No change. === Update WMparc(-wmparc) === No change. ---- MartinReuter...

14.8k - rev: 7 (current) last modified: 2011-04-18 13:09:05

LongitudinalProcessing . . . 1 match
...ellation to ASeg (-aparc2aseg) === Same processing as in cross sectional stream. === Update WMparc(-wmparc) === Same processing as in cross sectional stream. ---- MartinReuter...

19.3k - rev: 74 (current) last modified: 2021-05-03 07:53:08

LongitudinalEdits . . . 1 match
... }}} ---- *If WM edits were made on the long only, run (for all the longs that were edited): {{{ recon-all -long tpN1 templateID -autorecon2-wm -autorecon3 }}} ---- MartinReuter...

14.5k - rev: 60 (current) last modified: 2018-02-13 12:03:05

LongitudinalData . . . 1 match
...ate, DTI, ASL). Center for Cognition and Brain Disorders (CCBD) at Hangzhou Normal University (HNU) http://fcon_1000.projects.nitrc.org/indi/CoRR/html/hnu_1.html ---- MartinReuter...

2.3k - rev: 2 (current) last modified: 2019-01-10 13:44:23

FsTutorial/LongitudinalTutorial_tktools . . . 1 match
...ONG|here]] to see the results of creating a new long file from the edited base and cross-sectional. You will do the same for MR1. ---- MartinReuter , KhoaNguyen , SaradaSivaraman...

29.0k - rev: 153 (current) last modified: 2013-11-01 14:33:07

FsTutorial/LongitudinalTutorialV5 . . . 1 match
...king edits to the brain.finalsurfs.mgz, save as brain.finalsurfs.manedit.mgz! ---- MartinReuter ---- == Study Questions == *What are the three processing steps and what do they ...

35.2k - rev: 134 (current) last modified: 2018-07-25 12:14:42

FsTutorial/LongitudinalTutorial . . . 1 match
..."500px}} The same improvement should have occurred with MR2.longitudinal run. ---- MartinReuter ---- == Quiz == You can test your knowledge of this tutorial by [[https://forms.gl...

50.8k - rev: 50 (current) last modified: 2019-08-29 15:50:40