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Revision History
#
Date
Size
Editor
Comment
Action
277
2017-02-17 11:53:55
174
to previous
LeeTirrell
Updated to point to 6.0 as the most stable release
view
276
2016-06-16 16:30:23
175
to previous
AllisonMoreau
added link to 5.3 table
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275
2016-05-19 15:39:17
177
to previous
NickSchmansky
fixed DKTatlas references
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274
2016-05-19 15:35:30
177
to previous
NickSchmansky
added -mprage flags, removed surfvolume stage
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273
2016-05-19 15:14:49
178
to previous
NickSchmansky
removed no_neck stages
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272
2016-05-19 15:01:51
185
to previous
NickSchmansky
updates for v6
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271
2016-05-19 13:55:52
186
to previous
NickSchmansky
command updates to match v6
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270
2015-06-22 14:46:16
186
to previous
NickSchmansky
added --stop 1e4 --shrink 2 to both nu_correct commands
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269
2015-06-17 17:03:28
186
to previous
NickSchmansky
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268
2015-06-08 20:05:38
186
to previous
NickSchmansky
nuintensitycor moved from autorecon2 to autorecon1
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267
2015-05-12 15:04:59
188
to previous
NickSchmansky
removed -label-ec-exvivo-avg step, since EC_exvivo_average.label now looks the same as entorhinal_exvivo.label
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266
2015-05-08 15:10:05
189
to previous
NickSchmansky
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265
2015-05-08 15:07:16
189
to previous
NickSchmansky
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264
2015-05-08 14:10:48
189
to previous
NickSchmansky
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263
2015-05-08 14:09:34
189
to previous
NickSchmansky
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262
2015-04-22 16:40:38
187
to previous
NickSchmansky
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261
2015-04-20 11:28:16
189
to previous
AllisonMoreau
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260
2015-04-20 11:27:30
189
to previous
AllisonMoreau
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259
2015-04-20 11:26:21
189
to previous
AllisonMoreau
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258
2015-04-20 11:20:06
189
to previous
AllisonMoreau
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257
2015-04-03 10:47:56
188
to previous
NickSchmansky
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256
2015-04-02 15:18:07
188
to previous
NickSchmansky
added -c ctrl_pts.mgz to mri_ca_normalize, -relabel_unlikely 9 .3 -prior 0.5 to mri_ca_label, and -lta to mri_cc, per natalia zaretskaya
view
255
2015-02-26 16:38:13
188
to previous
NickSchmansky
updated file list used in wmparc stats stage by mri_segstats, which reads a bunch of files not listed on the commandline
view
254
2015-02-26 15:24:21
188
to previous
NickSchmansky
updated file list used in aseg stats stage by mri_segstats, which reads a bunch of files not listed on the commandline
view
253
2015-02-16 17:55:21
188
to previous
NickSchmansky
added -orig_white white to pial stage mris_make _surfaces command
view
252
2015-02-16 13:11:52
188
to previous
NickSchmansky
added -orig_pial white and -fix_mtl to pial stage mris_make _surfaces command
view
251
2015-01-24 12:24:36
188
to previous
NickSchmansky
cortparc stage must run before parcstats so that ribbon.mgz is available
view
250
2015-01-22 14:31:15
188
to previous
NickSchmansky
fixed missing -aseg ../mri/aseg.presurf
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249
2015-01-12 21:06:00
188
to previous
NickSchmansky
view
248
2015-01-12 21:04:46
188
to previous
NickSchmansky
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247
2014-12-17 20:48:36
188
to previous
NickSchmansky
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246
2014-12-16 15:00:58
188
to previous
NickSchmansky
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245
2014-12-15 14:50:26
188
to previous
NickSchmansky
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244
2014-11-07 20:13:03
189
to previous
NickSchmansky
parcstats depends on wm.mz, ?h.white, ?h.pial and ?h.thickness
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243
2014-11-06 15:58:22
179
to previous
NickSchmansky
view
242
2014-11-06 15:57:33
181
to previous
NickSchmansky
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241
2014-11-06 15:42:16
179
to previous
NickSchmansky
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240
2014-11-06 15:40:10
181
to previous
NickSchmansky
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239
2014-11-06 15:37:40
179
to previous
NickSchmansky
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238
2014-11-06 15:35:02
180
to previous
NickSchmansky
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237
2014-11-06 15:21:21
175
to previous
NickSchmansky
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236
2014-11-06 15:10:25
175
to previous
NickSchmansky
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235
2014-11-06 15:08:59
177
to previous
NickSchmansky
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234
2014-11-06 15:02:14
171
to previous
NickSchmansky
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233
2014-11-06 14:56:28
165
to previous
NickSchmansky
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232
2014-11-06 14:44:25
165
to previous
NickSchmansky
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231
2014-11-06 14:42:12
166
to previous
NickSchmansky
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230
2014-11-06 14:40:07
167
to previous
NickSchmansky
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229
2014-11-06 14:27:52
168
to previous
NickSchmansky
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228
2014-11-06 14:14:23
172
to previous
NickSchmansky
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227
2014-11-06 14:00:21
173
to previous
NickSchmansky
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226
2014-11-06 13:51:59
173
to previous
NickSchmansky
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225
2014-11-06 13:46:58
167
to previous
NickSchmansky
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224
2014-11-06 13:37:14
169
to previous
NickSchmansky
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223
2014-11-06 01:32:48
169
to previous
NickSchmansky
view
222
2014-11-06 01:00:27
164
to previous
NickSchmansky
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221
2014-11-06 00:55:01
164
to previous
NickSchmansky
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220
2014-11-05 22:49:58
162
to previous
NickSchmansky
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219
2014-11-05 22:39:55
160
to previous
NickSchmansky
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218
2014-11-05 18:12:57
160
to previous
NickSchmansky
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217
2014-11-05 18:09:36
159
to previous
NickSchmansky
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216
2014-11-05 18:08:44
157
to previous
NickSchmansky
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215
2014-11-05 17:57:41
162
to previous
NickSchmansky
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214
2014-11-04 22:16:07
158
to previous
NickSchmansky
view
213
2014-11-04 22:15:42
158
to previous
NickSchmansky
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212
2014-11-04 21:18:24
154
to previous
NickSchmansky
view
211
2014-11-04 21:17:39
154
to previous
NickSchmansky
view
210
2014-11-03 22:26:44
154
to previous
NickSchmansky
added -hyporelabel stage
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209
2014-10-31 19:27:03
154
to previous
NickSchmansky
view
208
2014-10-31 18:39:55
151
to previous
NickSchmansky
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207
2014-10-31 18:36:29
150
to previous
NickSchmansky
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206
2014-10-31 18:34:51
150
to previous
NickSchmansky
view
205
2014-10-31 18:33:23
150
to previous
NickSchmansky
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204
2014-10-31 18:29:10
144
to previous
NickSchmansky
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203
2014-10-31 18:27:26
143
to previous
NickSchmansky
view
202
2014-10-31 17:59:55
143
to previous
NickSchmansky
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201
2014-10-31 17:51:22
135
to previous
NickSchmansky
view
200
2014-10-31 17:38:47
133
to previous
NickSchmansky
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199
2014-10-20 20:51:42
133
to previous
NickSchmansky
view
198
2014-10-20 20:46:57
133
to previous
NickSchmansky
view
197
2014-09-23 18:15:07
133
to previous
NickSchmansky
added -apas2aseg stage (creation of aseg+.mgz, which is aseg.mgz with gm corrected by surfaces)
view
196
2014-09-18 15:17:34
132
to previous
NickSchmansky
view
195
2014-09-18 12:20:29
130
to previous
NickSchmansky
new subcortical atlas: RB_all_2014_08_21.gca
view
194
2014-09-18 12:18:11
130
to previous
NickSchmansky
nu.mgz is now created after brainmask.mgz (skullstrip stage), as nu works best if brain is masked
view
193
2014-09-17 16:41:43
130
to previous
NickSchmansky
view
192
2014-01-09 13:52:18
131
to previous
MaritzaEbling
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191
2014-01-09 11:22:37
129
to previous
MaritzaEbling
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190
2013-12-11 18:02:35
123
to previous
MaritzaEbling
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189
2013-12-11 11:29:43
125
to previous
MaritzaEbling
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188
2013-08-30 15:42:24
123
to previous
AllisonStevens
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187
2013-07-15 12:57:06
123
to previous
LouisVinke
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186
2012-03-26 16:48:17
123
to previous
NickSchmansky
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185
2012-03-26 16:48:05
123
to previous
NickSchmansky
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184
2011-12-06 17:20:38
123
to previous
AllisonStevens
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183
2011-08-17 17:17:29
123
to previous
NickSchmansky
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182
2011-03-22 10:20:26
123
to previous
KhoaNguyen
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181
2011-03-22 10:19:40
123
to previous
KhoaNguyen
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180
2011-03-22 10:18:56
123
to previous
KhoaNguyen
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179
2011-03-22 10:14:53
125
to previous
KhoaNguyen
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178
2011-03-22 10:14:03
123
to previous
KhoaNguyen
view