ReconAll Table
The ReconAll Table lists the inputs, outputs, and commands used for each processing step in recon-all -all. This can be a helpful resource when trying to figure out how to modify a particular part of the processing stream or how to rerun a few of the steps.
These tables list the generic steps that come from running the different versions of FreeSurfer downloaded from our website. To most accurately know what commands were run on one of your datasets, you should look at the recon-all.log found in the scripts directory of that subject. This will list the exact commands and flags used as well as the appropriate hemi and file names. The tables list ?h to show it is done on each hemisphere separately and also make certain assumptions about the directory from which the command is being run.
Here is a list of tables we have:
ReconAllDevTable - this table is updated as changes are made during ongoing development of FreeSurfer
OtherUsefulFlags - lists flags and processing stage shortcuts which are useful when editing a recon