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|Current skullstripping code: PICASSO -- need to get it independently, from github||Current skullstripping code: PICASSO -- need to get it independently, from [[https://www.nitrc.org/projects/picasso/|NITRC]]. With questions related to this tool, contact Dr Ou ( firstname.lastname@example.org ).|
Code: Click here to request.
Zöllei et al. FreeSurfer image processing pipeline for infant clinical MRI images. Human Brain Mapping, Vancouver, Canada, 2017. (until journal submission is still under review)
de Macedo Rodrigues, K., et al., A FreeSurfer-compliant consistent manual segmentation of infant brains spanning the 0–2 year age range. Front. Hum. Neurosci., 2015. 9(21).
setenv SUBJECTS_DIR your_data_path
infant_recon_all --s SUBJ --age age_in_months
Other useful flags:
--masked (using a skullstripped input)
--outdir (redirecting output)
--kneigh (number of training examples to use)
See infant_recon_all --help for more information