Index
Contents
Name
mri_ca_normalize - creates a normalized volume using the brain volume and an input gca file
Synopsis
mri_ca_normalize [<options>] <inbrain1> <inbrain2> ... <atlas> <transform file> <output1> <output2> ...
Arguments
Positional Arguments
inbrain1 |
input volume |
inbrain2 |
input volume |
atlas |
atlas file in gca format |
xform |
tranform file in lta format |
output1 |
output volume |
output2 |
output volume |
Required Flagged Arguments
None
Optional Flagged Arguments
-mask |
specifies volume to use as mask |
-p |
specifies the percentage of likely wm to use as control points, the default setting is 50% |
Outputs
outvol |
output volume in either mgh or mgz format |
Description
description
Examples
Example 1
mri_ca_normalize -mask -p 0.25 subject1/mri/brain subject1/mri/nu single_one.gca subject1/mri/transforms/talairach_one.lta subject1/mri/norm_one.mgh
Bugs
None
See Also
Links
Methods Description
??
References
Reporting Bugs
Report bugs to <analysis-bugs@nmr.mgh.harvard.edu>