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| mri_ca_normalize - ? | mri_ca_normalize - creates a normalized volume using the brain volume and an input gca file |
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| mri_ca_normalize invol atlas xform outvol | mri_ca_normalize [<options>] <inbrain1> <inbrain2> ... <atlas> <transform file> <output1> <output2> ... |
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||invol || input volume|| ||atlas ||atlas|| ||xform || tranform file || ||outvol || output volume|| |
||inbrain1 || input volume|| ||inbrain2 || input volume|| ||atlas ||atlas file in gca format|| ||xform || tranform file in lta format|| ||output1 || output volume|| ||output2 || output volume|| |
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None |
||-mask || specifies volume to use as mask || ||-p || specifies the percentage of likely wm to use as control points, the default setting is 50% || |
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| || outvol || output volume || | || outvol || output volume in either mgh or mgz format || |
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| ?? | mri_ca_normalize -mask -p 0.25 subject1/mri/brain subject1/mri/nu single_one.gca subject1/mri/transforms/talairach_one.lta subject1/mri/norm_one.mgh |
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== Example 2 == ?? |
Navigation(children) Index TableOfContents
Name
mri_ca_normalize - creates a normalized volume using the brain volume and an input gca file
Synopsis
mri_ca_normalize [<options>] <inbrain1> <inbrain2> ... <atlas> <transform file> <output1> <output2> ...
Arguments
Positional Arguments
inbrain1 |
input volume |
inbrain2 |
input volume |
atlas |
atlas file in gca format |
xform |
tranform file in lta format |
output1 |
output volume |
output2 |
output volume |
Required Flagged Arguments
None
Optional Flagged Arguments
-mask |
specifies volume to use as mask |
-p |
specifies the percentage of likely wm to use as control points, the default setting is 50% |
Outputs
outvol |
output volume in either mgh or mgz format |
Description
description
Examples
Example 1
mri_ca_normalize -mask -p 0.25 subject1/mri/brain subject1/mri/nu single_one.gca subject1/mri/transforms/talairach_one.lta subject1/mri/norm_one.mgh
Bugs
None
See Also
["othercommand1"], ["othercommand2"]
Links
Methods Description
??
References
["References/Lastname###"]
Reporting Bugs
Report bugs to <analysis-bugs@nmr.mgh.harvard.edu>