Index

Name

mri_ca_normalize - creates a normalized volume using the brain volume and an input gca file

Synopsis

Arguments

Positional Arguments

inbrain1

input volume

inbrain2

input volume

atlas

atlas file in gca format

xform

tranform file in lta format

output1

output volume

output2

output volume

Required Flagged Arguments

None

Optional Flagged Arguments

-mask

specifies volume to use as mask

-p

specifies the percentage of likely wm to use as control points, the default setting is 50%

Outputs

outvol

output volume in either mgh or mgz format

Description

description

Examples

Example 1

mri_ca_normalize -mask -p 0.25 subject1/mri/brain subject1/mri/nu single_one.gca subject1/mri/transforms/talairach_one.lta subject1/mri/norm_one.mgh

Bugs

None

See Also

othercommand1, othercommand2

Links

FreeSurfer, FsFast

Methods Description

??

References

References/Lastname###

Reporting Bugs

Report bugs to <analysis-bugs@nmr.mgh.harvard.edu>

Author/s

BruceFischl

mri_ca_normalize (last edited 2008-04-29 11:45:14 by localhost)