| Deletions are marked like this. | Additions are marked like this. |
| Line 13: | Line 13: |
|
ARRRG -- just edited this page by mistake. In the process of restoring. Sorry! --GW 2008-01-21 |
|
| Line 24: | Line 22: |
| Xxx | Reads data from two or more subjects and creates a template file. |
| Line 27: | Line 25: |
| mri_make_template Xxxx | mri_make_template subject1 [subject2...] ouput_template_path |
| Line 31: | Line 29: |
|
|
||<^>'''Posn'''||<^> <'''Argname'''> ||<^>'''Description'''|| ||<^>1 to last-1||<^> <subject> ||<^>List of one or more subjects to input|| ||<^>last||<^> <Out_fname> ||<^>Full path to output template file.|| |
| Line 59: | Line 58: |
| ?? | Not sure what kind of template this produces, nor what registration is expected upstream from the is program. --GW |
| Line 93: | Line 92: |
| BruceFischl | BruceFischl, GrahamWideman |
Navigation(children) Index TableOfContents
Software version described:
- $Date: 2006/12/29 02:09:07 $
- $Revision: 1.25 $
- Use usage or version option to see version you are using
Name
mri_make_template
Overview
Reads data from two or more subjects and creates a template file.
Synopsis
mri_make_template subject1 [subject2...] ouput_template_path
Arguments
Positional Arguments
Posn |
<Argname> |
Description |
1 to last-1 |
<subject> |
List of one or more subjects to input |
last |
<Out_fname> |
Full path to output template file. |
Required Flagged Arguments
None
Optional Flagged Arguments
Category |
Flag |
<Args> |
Description |
Input |
-open |
<open> |
Open input volume {open} times |
Input |
-sdir |
<subjects_dir> |
Sets SUBJECTS_DIR instead of default |
Input |
-T1 |
<T1_name> |
Reads T1 volume from directory T1_name. (Or file, presumably?) |
Output |
-B |
<binary_name> |
Generates binary template from {binary_name} volume |
Output |
-novar |
|
Disables writing of variance estimates |
Output |
-S,-V |
<var_fname> |
Writes variances |
Output |
-statsonly |
|
|
Output |
-X |
<xform_mean_fname, xform_covariance_fname> |
Writes means and covariances of xforms |
Algorithm |
-binarize |
<binarize (int)> |
Binarizes input volume with thresh= binarize |
Algorithm |
-erode |
<erode> |
Erodes input volume {erode} times |
Algorithm |
-N |
|
Don't use transform on first volume |
Algorithm |
-smooth |
<smooth (float)> |
Smooths output with Gaussian sigma= smooth |
Algorithm |
-T |
<transform_fname> |
Applies transformation {transform_fname} to each volume |
Utility |
-?,-U |
|
Print usage |
Footer |
XXXXXXXXXXXXX |
|
Outputs
output |
?? |
Description
Not sure what kind of template this produces, nor what registration is expected upstream from the is program. --GW
Examples
Example 1
??
description
Example 2
command foo -i f -o out -f fvalue
description
Bugs
None
See Also
["mris_make_template"]
Links
Methods Description
??
References
["References/Lastname###"]
Reporting Bugs
Report bugs to <analysis-bugs@nmr.mgh.harvard.edu>