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mris_curvature_stats [options] <subjectName> <hemi> <curvFile1> [... <curvFileN] mris_curvature_stats [options] <subjectId> <hemi> <curvFile1> [... <curvFileN]
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|| argA || brief description || detailed description (eg, help file information) ||
|| argB || brief description || detailed description (eg, help file information) ||
|| subjectId || Subject Id || detailed description (eg, help file information) ||
|| hemi || hemisphere || rh or lh ||
|| curvFile1..curvFileN || List of one or more existing curvature files to input || Note that this program can also calculate (and save) other curvatures from surfaces selected by other options. ||
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|| -flag1 arg1 || brief description || detailed description (eg, help file information) ||
|| -flag2 arg2 || brief description || detailed description (eg, help file information) ||
Not sure if any flagged arguments are actually ''required''. -- GW
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|| -flag3 arg3 || brief description ||detailed description (eg, help file information) ||
|| -flag4 arg4 || brief description ||detailed description (eg, help file information) ||
|| -a <numberOfAverages>|| Average the curvature <numberOfAverages> times.||

|| -o <outputFileStem> || Save processing results to a series of files.
This includes condensed text output, histogram files (MatLAB friendly)
and curvature files. ||

|| -flag3 arg3 || description ||
|| -flag3 arg3 || description ||
|| -flag3 arg3 || description ||
|| -flag3 arg3 || description ||
|| -flag3 arg3 || description ||
|| -flag3 arg3 || description ||
|| -flag3 arg3 || description ||
|| -flag3 arg3 || description ||

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FreeSurfer, FsFast FreeSurfer
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JaneSmith GrahamWideman
(Program author: RudolphPienaar)

Index TableOfContents

Name

mris_curvature_stats - will primarily compute the mean and variances for a curvature file (or a set of curvature files). These files can be possibly constrained by a label.

Additionally, 'mris_curvature_stats' can report the max/min curvature values, and compute a simple histogram based on these vales.

Curvatures can also be normalised and constrained to a given range before computation.

Gaussian and mean calculations on a surface structure can be performed.

Finally, all output to the console, as well as any new curvatures that result from the above calculations can be saved to a series of text and binary-curvature files. Please see the descriptions of options for more details.

Synopsis

mris_curvature_stats [options] <subjectId> <hemi> <curvFile1> [... <curvFileN]

Arguments

Positional Arguments

subjectId

Subject Id

detailed description (eg, help file information)

hemi

hemisphere

rh or lh

curvFile1..curvFileN

List of one or more existing curvature files to input

Note that this program can also calculate (and save) other curvatures from surfaces selected by other options.

Required Flagged Arguments

Not sure if any flagged arguments are actually required. -- GW

Optional Flagged Arguments

-a <numberOfAverages>

Average the curvature <numberOfAverages> times.

|| -o <outputFileStem> || Save processing results to a series of files. This includes condensed text output, histogram files (MatLAB friendly) and curvature files. ||

-flag3 arg3

description

-flag3 arg3

description

-flag3 arg3

description

-flag3 arg3

description

-flag3 arg3

description

-flag3 arg3

description

-flag3 arg3

description

-flag3 arg3

description

Outputs

volume1

description

volume2

description

Description

description

Examples

Example 1

command foo -i f -o out

description

Example 2

command foo -i f -o out -f fvalue

description

Bugs

None

See Also

["othercommand1"], ["othercommand2"]

Links

FreeSurfer

Methods Description

description
description

References

["References/Lastname###"]

Reporting Bugs

Report bugs to <analysis-bugs@nmr.mgh.harvard.edu>

Author/s

GrahamWideman (Program author: RudolphPienaar)

mris_curvature_stats (last edited 2008-04-29 11:45:53 by localhost)