Index
Contents
Name
mris_fix_topology
Synopsis
mris_fix_topology [options] <subject name> <hemisphere>
Arguments
Positional Arguments
<subject name> |
subject name |
<hemisphere> |
hemisphere |
Required Flagged Arguments
none
Optional Flagged Arguments
-orig origname |
|
-sphere spherename |
|
-inflated inflatedname |
|
-wi |
write fixed inflated |
-verbose |
|
-verbose_low |
|
-warnings |
|
-errors |
|
-movies |
|
-intersect |
check if the final surface self-intersects |
-mappings |
generate several different mappings |
-correct_defect N |
correct defect N only |
-niters N |
stop genetic algorithm after N iterations |
-genetic |
use genetic search |
-ga |
optimize genetic search |
-optimize |
optimize genetic search |
-random N |
use random search with N iterations |
-seed N |
set random number generator seed to N |
-diag |
sets DIAG_SAVE_DIAGS |
-mgz |
assume volumes are in mgz format |
-s N |
smooth corrected surface by N iterations |
-v D |
set diagnostic level to D |
-help |
print help and exit |
-version |
print version and exit |
Description
This program computes a mapping from the unit sphere onto the surface of the cortex from a previously generated approximation of the cortical surface, thus guaranteeing a topologically correct surface.
Examples
Example 1
??
Example 2
??
Bugs
none
See Also
Links
Reporting Bugs
Report bugs to <analysis-bugs@nmr.mgh.harvard.edu>