Index

Name

mris_fix_topology

Synopsis

mris_fix_topology [options] <subject name> <hemisphere>

Arguments

Positional Arguments

<subject name>

subject name

<hemisphere>

hemisphere

Required Flagged Arguments

none

Optional Flagged Arguments

-orig origname

-sphere spherename

-inflated inflatedname

-wi

write fixed inflated

-verbose

-verbose_low

-warnings

-errors

-movies

-intersect

check if the final surface self-intersects

-mappings

generate several different mappings

-correct_defect N

correct defect N only

-niters N

stop genetic algorithm after N iterations

-genetic

use genetic search

-ga

optimize genetic search

-optimize

optimize genetic search

-random N

use random search with N iterations

-seed N

set random number generator seed to N

-diag

sets DIAG_SAVE_DIAGS

-mgz

assume volumes are in mgz format

-s N

smooth corrected surface by N iterations

-v D

set diagnostic level to D

-help

print help and exit

-version

print version and exit

Description

This program computes a mapping from the unit sphere onto the surface of the cortex from a previously generated approximation of the cortical surface, thus guaranteeing a topologically correct surface.

Examples

Example 1

??

Example 2

??

Bugs

none

See Also

othercommand1, othercommand2

Links

FreeSurfer

Reporting Bugs

Report bugs to <analysis-bugs@nmr.mgh.harvard.edu>

Author/s

BruceFischl

mris_fix_topology (last edited 2018-01-17 09:52:50 by MorganFogarty)