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| mris_fix_topology - computes mapping from unit sphere to previously generated CorticalSurface | mris_fix_topology |
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?? = Outputs = || ?? || ?? || |
||-orig origname || || ||-sphere spherename || || ||-inflated inflatedname || || ||-wi || write fixed inflated || ||-verbose || || ||-verbose_low || || ||-warnings || || ||-errors || || ||-movies || || ||-intersect || check if the final surface self-intersects || ||-mappings || generate several different mappings || ||-correct_defect N || correct defect N only || ||-niters N || stop genetic algorithm after N iterations || ||-genetic || use genetic search || ||-ga || optimize genetic search || ||-optimize || optimize genetic search || ||-random N || use random search with N iterations || ||-seed N || set random number generator seed to N || ||-diag || sets DIAG_SAVE_DIAGS || ||-mgz || assume volumes are in mgz format || ||-s N || smooth corrected surface by N iterations || ||-v D || set diagnostic level to D || ||-help || print help and exit || ||-version || print version and exit || |
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| [[mris_fix_topology]] computes a mapping from the unit sphere onto the surface of the cortex from a previously generated approximation of the cortical surface, thus guaranteeing a topologically correct surface. | This program computes a mapping from the unit sphere onto the surface of the cortex from a previously generated approximation of the cortical surface, thus guaranteeing a topologically correct surface. |
Index
Contents
Name
mris_fix_topology
Synopsis
mris_fix_topology [options] <subject name> <hemisphere>
Arguments
Positional Arguments
<subject name> |
subject name |
<hemisphere> |
hemisphere |
Required Flagged Arguments
none
Optional Flagged Arguments
-orig origname |
|
-sphere spherename |
|
-inflated inflatedname |
|
-wi |
write fixed inflated |
-verbose |
|
-verbose_low |
|
-warnings |
|
-errors |
|
-movies |
|
-intersect |
check if the final surface self-intersects |
-mappings |
generate several different mappings |
-correct_defect N |
correct defect N only |
-niters N |
stop genetic algorithm after N iterations |
-genetic |
use genetic search |
-ga |
optimize genetic search |
-optimize |
optimize genetic search |
-random N |
use random search with N iterations |
-seed N |
set random number generator seed to N |
-diag |
sets DIAG_SAVE_DIAGS |
-mgz |
assume volumes are in mgz format |
-s N |
smooth corrected surface by N iterations |
-v D |
set diagnostic level to D |
-help |
print help and exit |
-version |
print version and exit |
Description
This program computes a mapping from the unit sphere onto the surface of the cortex from a previously generated approximation of the cortical surface, thus guaranteeing a topologically correct surface.
Examples
Example 1
??
Example 2
??
Bugs
none
See Also
Links
Methods Description
{{{??
}}}
References
Reporting Bugs
Report bugs to <analysis-bugs@nmr.mgh.harvard.edu>