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| = Talairach_Avi = | = talairach_avi = |
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| This is an automatic Talairaching procedure implemented by Dr.Avi Snyder of WUSTL ( hence the suffix "avi" ). This is incorporated in Version 4 and later. |
This is incorporated in Version 4 and later. Front-end for Avi Snyders (WUSTL) image registration tool. Computes the talairach transform that maps the input volume to the MNI average_305. Note: does not add the xfm to the header of the input file. See [[mri_add_xform_to_header]]. In recon-all -talairach: * creates transforms/talairach.xfm * talairach.xfm is now used for the [[eTIV]] computation * verify transform by invoking (from the subjects mri directory): {{{ tkregister2 --targ $FREESURFER_HOME/average/711-2Cs_mni_average_305.4dfp.img --mov ./T1.mgz --xfm ./transforms/talairach.xfm --reg delme.reg }}} |
talairach_avi
This is incorporated in Version 4 and later. Front-end for Avi Snyders (WUSTL) image registration tool. Computes the talairach transform that maps the input volume to the MNI average_305.
Note: does not add the xfm to the header of the input file. See mri_add_xform_to_header.
In recon-all -talairach:
- creates transforms/talairach.xfm
talairach.xfm is now used for the eTIV computation
- verify transform by invoking (from the subjects mri directory):
tkregister2 --targ $FREESURFER_HOME/average/711-2Cs_mni_average_305.4dfp.img --mov ./T1.mgz --xfm ./transforms/talairach.xfm --reg delme.reg