Index

Name

tkregister-sess - viewing the registration of images

Synopsis

tkregister-sess

Arguments

Positional Arguments

None

Required Flagged Arguments

None

Optional Flagged Arguments

-sf sessidfile

...

-df srchdirfile

...

-s sessid

...

-d srchdir

...

-surf surfacename

display surfacename as an overlay (white)

-nosurf

don't display a surface

-rsd dir

subdirectory with data to register ()

-fsd dir

functional subdirectory (bold)

-asd dir

anatomical subdirectory (3danat)

-nocopy

do not copy registration to fsd

-sessanat

register to same-session anatomical

-anatvol dir

specify subdirectory of subjid/mri

-volview volid

starup with either <targ> or mov

-fov FOV

set window FOV in mm (default is 256)

-movscale scale

scale size of move

-plane orient

starup with orient. <cor>, sag, or ax

-slice sliceno

starup with slice. Default is 128

-regfile file

use file instead of register.dat

-umask umask

set unix file permission mask

-version

print version and exit

-useold

use tkregister instead of tkregister2

Outputs

<??> ??

Description

Because of movement and EPI distortion, the automatic stage can only get the registration close. Manual registration is used to check and fine-tune the automatic registration, or to perform the entire registration in the case that there are no same-session anatomicals or if the automatic registration failed. Even if the automatic registration succeeded, always check the registration manually.

Examples

Example 1

tkregister-sess –sf sessid –df sesspar

This will read the register.dat created by the automatic registration and bring up two windows, one with a brain, the other a control window.

Bugs

???

See Also

tkregister2

Links

FreeSurfer, FsFast

Methods Description

???

References

References/Lastname###

Reporting Bugs

Report bugs to <analysis-bugs@nmr.mgh.harvard.edu>

Author/s

DougGreve

tkregister-sess (last edited 2008-04-29 11:45:26 by localhost)