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| All protocols for the following data sets can be found [[http://adni.loni.usc.edu/methods/documents/ | here.]] |
ADNI
The Alzheimer's Disease Neuroimaging Initiative
ADNI Data
The most up to date ADNI data is here:
/autofs/space/mreuter/ADNI/download_june2014/ADNI-3T-FS-5.3-Good (cross-sectional)
/autofs/space/mreuter/ADNI/download_june2014/ADNI-3T-FS-5.3-Long (longitudinal)
/autofs/space/mreuter/ADNI/download_june2014/Tables (Tables with information on the data)
Longitudinal Data Information
Three stages (ADNI, ADNI-GO and ADNI2) exists with 800-1000 subjects and several time points approx. 6 months to a year apart.
Manually Labeled Hippocampus Dataset
The following path leads to a dataset of 135 ADNI subjects with manually labeled hippocampus, labeled using a standard protocol.
/autofs/cluster/fsm/users/samseg/subjects/ADNI135-Hippo/orig
Downloading ADNI Data
AdniDownloadNotes - For information on how to download ADNI subject data.
ADNI Data Processing
AdniReconNotes - Recon-all notes for ADNI subjects
ADNI Data Information
All protocols for the following data sets can be found here.
ANDI1
This data set contains:
- 200 normal controls
- 400 MCI (mild cognitive impairment)
- 200 mild AD
ADNI-GO
ADNI-GO is a follow up from ADNI1 This data set contains:
- 200 EMCI (early mild cognitive impairment)
- 500 normal controls and MCI from ADNI1
ADNI2
This data set contains:
- 150 normal controls (new)
- 450-500 CN and MCI (from ADNI1)
- 150 EMCI (new)
- 200 EMCI (from ADNI GO)
- 150 LMCI (new - late mild cognitive impairment)
- 200 mild AD (new)
ADNI Testing
FreeSurfer Testing
ReleaseTestPlan - Describes the testing plan for new versions of FreeSurfer which involves testing with the ADNI dataset.
AdnidevtestV6 - Notes on testing FS6.0 with the ADNI60 data.
Buckner40Adni60Testing - Testing using ADNI60
Samseg Testing
SamsegTesting - Overview of the Samseg testing, ADNI60 is used for this testing. The following links are all contain data from various Samseg testing conducted on ADNI data.
SamsegTesting/2017-06-01_ADNI60
SamsegTesting/2017-05-26_ADNI60
SamsegTesting/2017-04-14_ADNIHIPPO
Dementia Forecast Tool Testing
DementiaForecast - This wiki is an overview for the tool being built to predict amyloid status and forecast future clinical progression toward AD dementia.
Other Testing with ADNI Data
CorticalHubs - Hypothesis and references for cortical hubs.
Chubs - Protocol for analyzing cortical hubs (regions-of-interest defined by cortical thickness differences between older controls and individuals classified as having AD).
SurfacePowerTest - Testing loss and gain of statistical power using the ADNI60 dataset.
eTIV - Estimated total intracranial volume analysis, tested on ADNI datset.
ADNI Related Publications
All manuscripts using ADNI data must be reviewed and approved by the ADNI Data and Publications Committee prior to submission. The DPC will strive to have a response back to you within 10 working days after you submit your manuscript so as not to slow down your efforts. Any manuscript submissions or questions may be submitted to edrake@genetics.med.harvard.edu
In order to be in compliance with ADNI policies, you must include the language at the link below in the required sections (byline, title page, methods, acknowledgements) before submitting: http://adni.loni.usc.edu/wp-content/uploads/how_to_apply/ADNI_Manuscript_Citations.pdf
*****ATTENTION!!!: If you have a strict page number limit like in a workshop publication, consider if you want to use ADNI data in the first place or leave at least one page free for the ADNI acknowledgements and author names.