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| Welcome to the FreeSurferWiki. FreeSurfer is a set of tools for analysis and visualization of structural and functional brain imaging data. The FreeSurferWiki provides a documentation forum for investigators at the [http://www.martinos.org Athinoula A. Martinos Center For Biomedical Imaging]. | * Welcome to the FreeSurferWiki. The FreeSurferWiki provides a documentation forum for investigators at the MartinosCenter for Biomedical Imaging and for the !FreeSurfer user community at-large. * To gain access to the Wiki to make additions or improvements, see GettingAccess. Once you have access, see the WikiBeginnersGuide to get started. * Most of the Wiki is publicly readable, and is the central source for !FreeSurfer usage documentation. * Please feel free to email [[MailTo(fswiki DASH help AT nmr DOT mgh DOT harvard DOT edu, fswiki-help)]] if you have any questions or encounter any difficulties with this Wiki. General questions about !FreeSurfer should be directed to [[MailTo(freesurfer AT nmr DOT mgh DOT harvard DOT edu, freesurfer)]]. = Software = * [wiki:Self:FreeSurferDistributions Download and Install] * [wiki:Self:InternalFreeSurferDistributions Information for internal (NMR) users] * [wiki:Self:FtpFileExchange Information on FTP file exchange] * [wiki:Self:RemoteAccess Information on remote access] |
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| * FreeSurferInstallation * FreeSurferGuide * FreeSurferTutorial * FreeSurferTools |
* WorkFlows - Information on the how the FreeSurfer tools are used in a processing stream. * ["Articles"] - Background describing the techniques used in the FreeSurfer tools. * ["Tutorials"] - A walk-through of the recommended FreeSurfer work-flow, covering troubleshooting techniques. * ["ToolsAndCommands"] - GUI and command-line tool documentation. * ["Guides"] - * FileFormats - Description of native FreeSurfer file formats, as well as external file formats used by FreeSurfer. * CoordinateSystems - Details on the voxel and RAS coordinate systems used by FreeSurfer. * DevelopersGuide - Information for developers of the FreeSurfer code-base (Martinos Center internal). |
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| FreeSurferSupport | * FreeSurferSupport = WikiGuidelines = * CulturalGuidelines * StyleGuidelines = BeginnersGuides = * WikiBeginnersGuide * FreeSurferBeginnersGuide |
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| FreeSurfer is brought to you by [http://www.cortechs.net CorTechs] and NCRR/P41RR14075 | FreeSurfer is brought to you by [http://www.cortechs.net CorTechs], [http://crisp.cit.nih.gov/crisp/CRISP_LIB.getdoc?textkey=6641264&p_grant_num=5P41RR014075-05&p_query=&ticket=10459360&p_audit_session_id=48433183&p_keywords= NCRR/P41RR14075], R01 RR16594-01A1, and our ["Contributors"]. |
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| = MoinMoin Wiki = A WikiWikiWeb is a collaborative hypertext environment, with an emphasis on easy access to and modification of information. This wiki can also link to InterWiki space. MoinMoin is a Python Wiki:WikiClone, based on Wiki:PikiPiki. The name is a common German slang expression explained on the MoinMoin page. If you run a Wiki using MoinMoin, please add it to the MoinMoin:MoinMoinWikis page. Contributed code is on the MoinMoin:MacroMarket, MoinMoin:ActionMarket and MoinMoin:ParserMarket pages. For more details and further topics, see the MoinMoin page. ---- You can edit any page by pressing the link at the bottom of the page. Capitalized words joined together form a WikiName, which hyperlinks to another page. The highlighted title searches for all pages that link to the current page. Pages which do not yet exist are linked with a question mark: just follow the link and you can add a definition. To get an overview over this site and what it contains, see the SiteNavigation page. To learn more about what a WikiWikiWeb is, read about MoinMoin:WhyWikiWorks and the MoinMoin:WikiNature. Also, consult the MoinMoin:WikiWikiWebFaq. ---- Interesting starting points: * RecentChanges: see where people are currently working * HelpForBeginners: to get you going * WikiSandBox: feel free to change this page and experiment with editing * FindPage: search or browse the database in various ways * SyntaxReference |
Welcome
Welcome to the FreeSurferWiki. The FreeSurferWiki provides a documentation forum for investigators at the MartinosCenter for Biomedical Imaging and for the FreeSurfer user community at-large.
To gain access to the Wiki to make additions or improvements, see GettingAccess. Once you have access, see the WikiBeginnersGuide to get started.
Most of the Wiki is publicly readable, and is the central source for FreeSurfer usage documentation.
Please feel free to email MailTo(fswiki DASH help AT nmr DOT mgh DOT harvard DOT edu, fswiki-help) if you have any questions or encounter any difficulties with this Wiki. General questions about FreeSurfer should be directed to MailTo(freesurfer AT nmr DOT mgh DOT harvard DOT edu, freesurfer).
Software
[wiki:FreeSurferDistributions Download and Install]
[wiki:InternalFreeSurferDistributions Information for internal (NMR) users]
[wiki:FtpFileExchange Information on FTP file exchange]
[wiki:RemoteAccess Information on remote access]
Documentation
WorkFlows - Information on the how the FreeSurfer tools are used in a processing stream.
["Articles"] - Background describing the techniques used in the FreeSurfer tools.
["Tutorials"] - A walk-through of the recommended FreeSurfer work-flow, covering troubleshooting techniques.
["ToolsAndCommands"] - GUI and command-line tool documentation.
- ["Guides"] -
FileFormats - Description of native FreeSurfer file formats, as well as external file formats used by FreeSurfer.
CoordinateSystems - Details on the voxel and RAS coordinate systems used by FreeSurfer.
DevelopersGuide - Information for developers of the FreeSurfer code-base (Martinos Center internal).
Support
WikiGuidelines
BeginnersGuides
Acknowledgements
FreeSurfer is brought to you by [http://www.cortechs.net CorTechs], [http://crisp.cit.nih.gov/crisp/CRISP_LIB.getdoc?textkey=6641264&p_grant_num=5P41RR014075-05&p_query=&ticket=10459360&p_audit_session_id=48433183&p_keywords= NCRR/P41RR14075], R01 RR16594-01A1, and our ["Contributors"].