Welcome

• Welcome to the FreeSurferWiki. The FreeSurferWiki provides a documentation forum for investigators at the MartinosCenter for Biomedical Imaging, and for the FreeSurfer user community at-large.

• To gain access to the Wiki to make additions or improvements, see GettingAccess. Once you have access, see the WikiBeginnersGuide to get started.

• Most of the Wiki is publicly readable, and is the central source for FreeSurfer usage documentation. Be sure to see the FreeSurferBeginnersGuide.

• Please feel free to email MailTo(fswiki DASH help AT nmr DOT mgh DOT harvard DOT edu, fswiki-help) if you have any questions or encounter any difficulties with this Wiki. General questions about FreeSurfer should be directed to the MailTo(freesurfer AT nmr DOT mgh DOT harvard DOT edu, freesurfer mailing list). Bugs reports should be directed to the MailTo(analysis-bugs AT nmr DOT mgh DOT harvard DOT edu, analysis-bugs mailing list). Consult FreeSurferSupport for mailing lists and other helplines.

Software

• [wiki:DownloadAndInstall FreeSurfer download and install]

• [wiki:MiscellaneousDownloads Miscellaneous downloads]

• [wiki:InternalFreeSurferDistributions Information for internal (Martinos Center) users]

• [wiki:FtpFileExchange Information on FTP file exchange]

• [wiki:RemoteAccess Information on remote access]

Documentation

• WorkFlows - Information on the how the FreeSurfer tools are used in a processing stream.

• ArticlesSlidesAndPosters - Background describing the techniques used in the FreeSurfer tools, and their usage in research.

• ["Tutorials"] - A walk-through of a FreeSurfer work-flow, covering editing and troubleshooting techniques in-depth, as well as a group study example.

• ["ToolsAndCommands"] - GUI and command-line tool documentation.

• FileFormats - Description of native FreeSurfer file formats, as well as external file formats used by FreeSurfer.

• CoordinateSystems - Details on the voxel and RAS coordinate systems used in FreeSurfer.

• DevelopersGuide - Information for developers of the FreeSurfer code-base (Martinos Center internal).

Support

• FreeSurferSupport - Mailing lists and helplines which provide user support for FreeSurfer

WikiGuidelines

• CulturalGuidelines

• StyleGuidelines

BeginnersGuides

• WikiBeginnersGuide

• FreeSurferBeginnersGuide

Acknowledgements

• FreeSurfer is brought to you by [http://www.cortechs.net CorTechs], [http://crisp.cit.nih.gov/crisp/CRISP_LIB.getdoc?textkey=6641264&p_grant_num=5P41RR014075-05&p_query=&ticket=10459360&p_audit_session_id=48433183&p_keywords= NCRR/P41RR14075], [http://crisp.cit.nih.gov/crisp/CRISP_LIB.getdoc?textkey=6936484&p_grant_num=5R01RR01659404&p_query=&ticket=16737375&p_audit_session_id=78570196&p_keywords= R01 RR16594-01A1], and our ["Contributors"].