| Deletions are marked like this. | Additions are marked like this. |
| Line 9: | Line 9: |
| * TroubleshootingReconstruction (where automated programs fail, manual intervention required) | * TroubleshootingReconstruction (if the automated programs fail, manual intervention required) |
| Line 11: | Line 11: |
| * SubcorticalSegmentation | * SubcorticalSegmentation (already included in BasicReconstruction, but must be done separately if using Historical workflow) |
[wiki:FreeSurferWiki top] | [wiki:WorkFlows previous] | [wiki:BasicReconstruction next]
FreeSurfer Work Flows
FreeSurferWorkFlows describes processing workflows for FreeSurfer. FreeSurferWorkFlows includes:
Recommended:
BasicReconstruction (fully automated)
TroubleshootingReconstruction (if the automated programs fail, manual intervention required)
HistoricalReconstruction (semi-automated, with routine use of manual edits to segmented white matter volume)
SubcorticalSegmentation (already included in BasicReconstruction, but must be done separately if using Historical workflow)
User Contributed: