FreeSurfer Work Flows
FreeSurferWorkFlows describes processing workflows for FreeSurfer. An overview of the major processing steps taking place in a standard FreeSurfer workflow are described in this PDF slide presentation: Building Anatomical Models with Freesurfer, and also FreeSurferAnalysisPipelineOverview.
For more detail on how to use FreeSurfer, look through the tutorials we offer on the FsTutorial page.
FreeSurferWorkFlows include:
RecommendedReconstruction (with routine checks for automated program failures, and subsequent manual intervention)