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Recommended: '''Recommended:'''
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 * TroubleshootingReconstruction (if the automated programs fail, manual intervention required)  * TroubleshootingReconstruction (where manual interventions is required if the automated programs fail)
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    IMPORTANT: Whichever workflow you choose, you will need to use it to process all your data. IMPORTANT: Whichever workflow you choose, be sure to process ''all'' your data using the same workflow.
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User Contributed: '''User Contributed:'''

[wiki:FreeSurferWiki top] | [wiki:WorkFlows previous] | [wiki:BasicReconstruction next]

FreeSurfer Work Flows

FreeSurferWorkFlows describes processing workflows for FreeSurfer. FreeSurferWorkFlows includes:


Use the Basic workflow if you are just starting to process data. Use the Historical workflow if you have already processed large amounts of data using previous versions of FreeSurfer which required manual edits, and you do not wish to reprocess them with the Basic workflow. IMPORTANT: Whichever workflow you choose, be sure to process all your data using the same workflow.

User Contributed:

FreeSurferWorkFlows (last edited 2011-07-05 13:39:53 by AllisonStevens)