Diff for "FsTutorial/Amsterdam2012CourseSchedule"

Differences between revisions 3 and 4

FreeSurfer Course, 27-29 June 2012

Amsterdam, Netherlands

Wednesday, June 27th - Introduction / Single Subject / Registration / Troubleshooting

Time	Title	Type	Lecturer
8:30 - 9:00	Course Registration	sign-in	staff
9:00 - 9:30	Unix Tutorial for FreeSurfer Users 1. Surrey, 2. O'Reilly	tutorial	Pedro Paulo de M. Oliveira Jr.
9:30 - 10:00	Intro to FreeSurfer Jargon	talk	Pedro Paulo de M. Oliveira Jr.
10:00 - 10:30	Introduction to Freesurfer	talk	Nick Schmansky
10:30 - 11:00	FreeSurfer Applications, Articles	talk	Nick Schmansky
11:00 - 11:30	break
11:30 - 12:30	Analyzing the Individual Subject	talk	Allison Stevens
12:30 - 1:30	lunch	--	--
1:30 - 2:00	Tkmedit/Tksurfer demonstration	demo	Nick Schmansky
2:00 - 3:00	Interaction with Individual Subject Data Tutorial	tutorial	staff
3:00 - 3:30	break
3:30- 4:00	Failure Modes	talk	Allison Stevens
4:00 - 4:30	Quality Checking a Recon	demo	Allison Stevens
4:30 - 5:30	Troubleshooting Demonstration, Troubleshooting Tutorial	tutorial	staff, Allison

Thursday, June 28th - ROIs / Longitudinal / Multimodal / Group Analysis

Time	Title	Type	Lecturer
9:00 - 10:00	Group Analysis / GLM / Multiple Comparisons	talk	Lilla Zollei
10:00 - 10:30	QDEC demonstration	demo	Nick Schmansky
10:30 - 10:45	break
10:45 - 11:15	Group Analysis / Multiple Comparisons - mri_glmfit Tutorial	tutorial	staff
11:15 - 11:45	Group Analysis - qdec Tutorial	tutorial	staff
11:45 - 1:00	lunch	--	--
1:00 - 1:45	Registration Methods	talk	Lilla Zollei
2:15 - 2:45	Longitudinal FreeSurfer see also: LongitudinalProcessing	talk	Lilla Zollei
2:45 - 3:00	break
3:00 - 3:30	ROI Analysis	talk	Allison Stevens
3:30 - 4:00	A Non-physicist's Intro to MR SpinBench	talk	Andre van der Kouwe
4:00 - 4:30	ROI Analysis Tutorial	tutorial	staff
4:30 - 5:00	Longitudinal Tutorial	tutorial	staff

Friday, June 29th - fMRI / Diffusion / Q&A

Time	Title	Type	Lecturer
9:00 - 9:30	Diffusion Data Processing,dtrecon intro	talk	Lilla Zollei
9:30 - 10:30	Diffusion Processing Tutorial	tutorial	staff
10:30 - 11:00	break and group photo
11:00 - 11:30	TRActs Constrained by UnderLying Anatomy (TRACULA)	talk	Lilla Zollei
11:30 - 12:30	Tracula Tutorial	tutorial	staff
12:30 - 1:30	lunch	--	--
1:30 - 2:00	MRI Acquisition Methods for Morphometry	talk	Andre van der Kouwe
2:00 - 2:30	break and evaluations
2:30 - 3:00	Motion-compensated neuroanatomical imaging	talk	Andre van der Kouwe
3:00 - 3:30	iSurf and local FreeSurfer Applications	talk	Pedro Paulo de M. Oliveira Jr.
3:30 - 4:00	Question and Answer Session, FsQuiz	talk	staff

FsTutorial/Amsterdam2012CourseSchedule (last edited 2012-07-30 10:43:32 by NickSchmansky)

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-||'''Time''' ||'''Title''' ||'''Type''' ||'''Lecturer''' || '''Give us your feedback''' ||

||8:00 - 8:30 ||'''optional -''' [[http://surfer.nmr.mgh.harvard.edu/pub/docs/unix_tutorial_FS_course.ppt|Unix Tutorial for FreeSurfer Users]] [[http://www.ee.surrey.ac.uk/Teaching/Unix|online practice]] ||tutorial ||Allison Stevens ||  ||

||8:30 - 9:00 ||'''optional -''' [[http://surfer.nmr.mgh.harvard.edu/pub/docs/fsjargon.ppt|Intro to FreeSurfer Jargon|&do=get]] ||talk ||Allison Stevens ||          ||

||8:30 - 9:00 ||'''Course Registration''' ||sign-in ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/staff2011.jpg|staff]] ||       ||

||9:00 - 9:30 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/freesurfer.intro.ppt|Introduction to Freesurfer]] ||talk || ||          ||

||9:30 - 10:30 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/fsrecon.ppt|Analyzing the Individual Subject]] ||talk || ||          ||

||10:30 - 10:50 ||'''break''' || || || ||

||10:50 - 11:20 ||Tkmedit/Tksurfer demonstration ||demo || ||       ||

||11:20 - 11:50 ||[[FsTutorial/OutputData|Interaction with Individual Subject Data Tutorial]] ||tutorial ||staff ||         ||

||11:50 - 12:30 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/fs.surface-based-analysis.ppt|Surface-based Smoothing/Surface-based Registration|&do=get]] ||talk || ||     ||

||12:30 - 1:30 ||'''Lunch'''|| || ||

||''1:00 - 1:30'' ||''Optional Lunch Talk''- '' [[http://surfer.nmr.mgh.harvard.edu/pub/docs/FreeSurfer_Course_Dec_12_2011_MRI_Basics.pdf|A Non-physicist's Intro to MR|&do=get]] [[http://www.heartvista.com/SpinBench|SpinBench]]'' ||''talk'' || ||          ||

||1:30 - 2:15 || [[http://surfer.nmr.mgh.harvard.edu/pub/docs/fs.registration.ppt|Registration Methods|&do=get]] || talk ||  ||           ||

||2:15- 2:55 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/freesurfer.failure_modes.ppt|Failure Modes|&do=get]] ||talk || ||          ||

||2:55 - 3:15 ||'''break''' || || || ||

||3:15 - 3:35 ||Troubleshooting Demonstration || demo || Allison ||         ||

||3:35 - 4:35 || [[FsTutorial/TroubleshootingData|Troubleshooting Tutorial]] ||tutorial ||staff ||      ||

||4:35 - 5:30 || Quality Checking a Recon ||demo ||Allison Stevens ||      ||

||5:30 - ||'''optional -''' [[DownloadAndInstall|FreeSurfer Installation on Personal Laptops]] ||one-on-one || staff || ||

||5:30 - ||'''optional -''' [[http://surfer.nmr.mgh.harvard.edu/pub/docs/runningyourdata.ppt|Start Processing Your Own Data|&do=get]] ||one-on-one || staff ||      ||
+||'''Time''' ||'''Title''' ||'''Type''' ||'''Lecturer''' ||

||8:30 - 9:00 ||'''Course Registration''' ||sign-in || [[attachment:brazil2009.jpg|staff]] ||

||9:00 - 9:30 || [[http://surfer.nmr.mgh.harvard.edu/pub/docs/unix_tutorial_FS_course.ppt|Unix Tutorial for FreeSurfer Users]] [[http://www.ee.surrey.ac.uk/Teaching/Unix|1. Surrey]], [[http://docstore.mik.ua/orelly/linux/lnut/index.htm|2. O'Reilly]] ||tutorial || Pedro Paulo de M. Oliveira Jr.||

||9:30 - 10:00 || [[http://surfer.nmr.mgh.harvard.edu/pub/docs/fsjargon.ppt|Intro to FreeSurfer Jargon|&do=get]] ||talk ||Pedro Paulo de M. Oliveira Jr. ||

||10:00 - 10:30 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/freesurfer.intro.ppt|Introduction to Freesurfer|&do=get]] ||talk || Nick Schmansky ||

||10:30 - 11:00 || [[http://surfer.nmr.mgh.harvard.edu/pub/docs/freesurfer.applications.ppt|FreeSurfer Applications|&do=get]], [[Articles]] ||talk || Nick Schmansky ||

||11:00 - 11:30 ||'''break''' || || ||

||11:30 - 12:30 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/fsrecon.AS.ppt|Analyzing the Individual Subject]] ||talk || Allison Stevens ||

||12:30 - 1:30 ||'''lunch''' ||-- ||-- ||

||1:30 - 2:00 ||Tkmedit/Tksurfer demonstration ||demo || Nick Schmansky ||

||2:00 - 3:00 ||[[FsTutorial/OutputData|Interaction with Individual Subject Data Tutorial]] ||tutorial ||staff ||

||3:00 - 3:30 ||'''break''' || || ||

||3:30- 4:00 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/freesurfer.failure_modes.AS.ppt|Failure Modes|&do=get]] ||talk || Allison Stevens ||

||4:00 - 4:30 ||Quality Checking a Recon ||demo ||Allison Stevens ||

||4:30 - 5:30 ||Troubleshooting Demonstration, [[FsTutorial/TroubleshootingData|Troubleshooting Tutorial]] ||tutorial ||staff, Allison ||
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-||'''Time''' ||'''Title''' ||'''Type''' ||'''Lecturer''' || '''Give us your feedback''' ||

||9:00 - 10:00  ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/fs.roi.ppt|ROI Analysis|&do=get]] ||talk || ||    ||

||10:00 - 10:30 ||[[FsTutorial/AnatomicalROI|ROI Analysis Tutorial]] ||tutorial ||staff ||         ||

||10:30 - 10:50 ||'''break''' || || ||

||10:50 - 11:20 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/freesurfer.longitudinal.pdf|Longitudinal FreeSurfer|&do=get]] ''see also:'' LongitudinalProcessing ||talk || ||        ||

||11:20 - 12:10 ||Freeview Demo, [[FsTutorial/LongitudinalTutorial|Longitudinal Tutorial]] ||tutorial ||staff ||            ||

||12:10 - 1:10 ||'''Lunch''' ||-- ||-- ||

||''12:40 - 1:10'' ||''Optional Lunch Talk''- ''[[http://surfer.nmr.mgh.harvard.edu/pub/docs/mri_acquisition.ppt|MRI Acquisition Methods for Morphometry|&do=get]]'' ||''talk'' ||'''' ||           ||

||1:10 - 1:40 ||Future Directions: [[http://surfer.nmr.mgh.harvard.edu/pub/docs/freesurfer.inferring_architectonics.ppt|Inferring architectonic boundaries from in-vivo MRI|&do=get]] ||talk || ||           ||

||1:40 - 2:40 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/fs.multimodal-integration.ppt|Multi-Modal Integration|&do=get]] ||talk || ||           ||

||2:40 - 3:00 ||'''break''' || || ||

||3:00 - 3:45 ||[[FsTutorial/MultiModal|Multi-Modal Integration Tutorial]] ||tutorial ||staff ||             ||

||3:45 - 4:45 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/freesurfer.groupanalysis.ppt|Group Analysis / GLM / Multiple Comparisons]] ||talk || J. Eugenio Iglesias ||          ||

||4:45 - 5:15 ||QDEC demonstration ||demo ||Nick Schmansky ||             ||

||5:15 - 6:15 ||[[FsTutorial/GroupAnalysis|Group Analysis / Multiple Comparisons - mri_glmfit Tutorial]] ||tutorial ||staff ||            ||

||5:15 - 6:15 ||[[FsTutorial/QdecGroupAnalysis|Group Analysis - qdec Tutorial]] ||tutorial ||staff ||           ||
+||'''Time''' ||'''Title''' ||'''Type''' ||'''Lecturer''' ||

||9:00 - 10:00 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/freesurfer.groupanalysis.ppt|Group Analysis / GLM / Multiple Comparisons|&do=get]] ||talk || Lilla Zollei ||

||10:00 - 10:30 ||QDEC demonstration ||demo ||Nick Schmansky ||

||10:30 - 10:45 ||'''break''' || || ||

||10:45 - 11:15 ||[[FsTutorial/GroupAnalysis|Group Analysis / Multiple Comparisons - mri_glmfit Tutorial]] ||tutorial ||staff ||

||11:15 - 11:45 ||[[FsTutorial/QdecGroupAnalysis|Group Analysis - qdec Tutorial]] ||tutorial ||staff ||

||11:45 - 1:00 ||'''lunch''' ||-- ||-- ||

||1:00 - 1:45 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/fs.registration.ppt|Registration Methods|&do=get]]|| talk || Lilla Zollei ||

||2:15 - 2:45 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/freesurfer.longitudinal.ppt|Longitudinal FreeSurfer|&do=get]] ''see also:'' LongitudinalProcessing ||talk || Lilla Zollei ||

||2:45 - 3:00 ||'''break''' || || ||

||3:00 - 3:30 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/fs.roi.AS.ppt|ROI Analysis|&do=get]] ||talk || Allison Stevens ||

||3:30 - 4:00 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/mri_basics.pdf|A Non-physicist's Intro to MR|&do=get]] [[http://www.heartvista.com/SpinBench|SpinBench]] ||talk || Andre van der Kouwe||

||4:00 - 4:30 ||[[FsTutorial/AnatomicalROI|ROI Analysis Tutorial]] ||tutorial ||staff ||

||4:30 - 5:00 ||[[FsTutorial/LongitudinalTutorial|Longitudinal Tutorial]] ||tutorial ||staff ||
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-||'''Time''' ||'''Title''' ||'''Type''' ||'''Lecturer''' || '''Give us your feedback''' ||

||9:00 - 10:00 || [[http://surfer.nmr.mgh.harvard.edu/pub/docs/fmri.april2011.pdf|Basics of fMRI Analysis|&do=get]] ||talk ||  ||            ||

||10:00 - 10:20 ||'''break''' || || ||

||10:20 - 11:40 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/fsfast.april2011.ppt|FSFAST|&do=get]] ||talk || ||             ||

||11:40 - 12:40 ||[[FsFastTutorialV5.1|FSFAST Tutorial]] ||tutorial ||staff ||            ||

||12:40 - 1:40 ||'''Lunch''' ||-- ||-- ||

||''1:10 - 1:40'' ||''Optional Lunch Talk''- ''[[http://surfer.nmr.mgh.harvard.edu/pub/docs/FreeSurfer_Course_Dec_14_2011_Motion_Correction.pdf|Motion-compensated neuroanatomical imaging|&do=get]]'' ||''talk'' || ||             ||

||1:40 - 2:40 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/dmri,fs.ppt|Introduction to Diffusion MRI|&do=get]] ||talk || ||              ||

||2:40 - 3:25 ||[[FsTutorial/Diffusion|Diffusion Processing Tutorial]] ||tutorial ||staff ||                      ||

||3:25 - 3:45 ||'''break''' & Evaluation]] || || ||

||3:45 - 4:15 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/tracula,fs.ppt|TRActs Constrained by UnderLying Anatomy (TRACULA)|&do=get]] ||talk || ||              ||

||4:15 - 5:00 ||[[FsTutorial/Tracula|Tracula Tutorial]] ||tutorial ||staff ||                  ||

||5:00 - 5:30 ||Question and Answer Session, FsQuiz ||talk ||staff ||                    ||
+||'''Time''' ||'''Title''' ||'''Type''' ||'''Lecturer''' ||

||9:00 - 9:30 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/dmri,fs.ppt|Diffusion Data Processing|&do=get]],[[http://surfer.nmr.mgh.harvard.edu/pub/docs/fs.dt_recon-intro.ppt|dtrecon intro|&do=get]] ||talk ||Lilla Zollei ||

||9:30 - 10:30 ||[[FsTutorial/Diffusion|Diffusion Processing Tutorial]] ||tutorial ||staff ||

||10:30 - 11:00 ||'''break and [[attachment:IMG_4834.JPG|group photo]]''' || || ||

||11:00 - 11:30 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/tracula,fs.ppt|TRActs Constrained by UnderLying Anatomy (TRACULA)|&do=get]] ||talk ||Lilla Zollei||

||11:30 - 12:30 ||[[FsTutorial/Tracula|Tracula Tutorial]] ||tutorial ||staff ||

||12:30 - 1:30 ||'''lunch''' ||-- ||-- ||

||1:30 - 2:00 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/mri_acquisition.ppt|MRI Acquisition Methods for Morphometry|&do=get]] ||talk ||Andre van der Kouwe||

||2:00 - 2:30 ||'''break and [[ https://spreadsheets.google.com/viewform?formkey=dGpBYmJld1hhbXlkRjg0ZHIxblJCeWc6MA|evaluations]]''' || || ||

||2:30 - 3:00 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/tisdall_moco.pdf|Motion-compensated neuroanatomical imaging|&do=get]] ||talk ||Andre van der Kouwe||

||3:00 - 3:30 ||[[http://itunes.apple.com/us/app/isurf-brainview/id381072423?mt=8|iSurf]] and [[attachment:LocalApplicationsFSCourse.ppt|local FreeSurfer Applications]] ||talk ||Pedro Paulo de M. Oliveira Jr. ||

||3:30 - 4:00 ||Question and Answer Session, FsQuiz ||talk ||staff ||