Diff for "FsTutorial/Amsterdam2012CourseSchedule"

Differences between revisions 5 and 31 (spanning 26 versions)

FreeSurfer Course, 27-29 June 2012

Amsterdam, Netherlands

Home page: www.freesurfercourseamsterdam.nl

Hosted by: Dept. of Radiology, VU University Medical Center

Venue: http://www.griffioen.vu.nl/nl/zaalverhuur/zalen/griffioenzaal.asp

Location: Google Maps

------------------------------ CLASS PHOTO ------------------------------

Wednesday, June 27th - Introduction / Single Subject / MRI Acquisition / Troubleshooting

Time	Title	Type	Lecturer
8:30 - 9:45	Course Registration (Note: overlaps with optional tutorials)	sign-in	staff
9:00 - 9:30	optional - Unix Tutorial for FreeSurfer Users online practice	tutorial	Allison Stevens
9:30 - 10:00	optional - Intro to FreeSurfer Jargon	talk	Allison Stevens
10:00 - 10:30	Introduction to Freesurfer	talk	Nick Schmansky
10:30 - 11:00	FreeSurfer Applications, Publications	talk	Nick Schmansky
11:00 - 11:30	break
11:30 - 12:30	Analyzing the Individual Subject	talk	J. Eugenio Iglesias
12:30 - 1:30	lunch	--	--
1:30 - 2:00	Tkmedit/Tksurfer demonstration	demo	Nick Schmansky
2:00 - 3:00	Interaction with Individual Subject Data Tutorial	tutorial	staff
3:00 - 3:30	break
3:30 - 4:00	MRI Acquisition Methods for Morphometry	talk	Andre van der Kouwe
4:00 - 4:30	Failure Modes	talk	Allison Stevens
4:30 - 5:30	Troubleshooting Demonstration, Troubleshooting Tutorial	tutorial	staff, Allison

Thursday, June 28th - MRI Basics / Registration / ROIs / Group Analysis/ Longitudinal / Multimodal

Time	Title	Type	Lecturer
9:00 - 9:30	A Non-physicist's Intro to MR, Bloch concepts	talk	Andre van der Kouwe
9:30 - 10:30	Registration & Multimodal Methods	talk	Lilla Zollei
10:30 - 10:45	break
10:45 - 11:15	ROI Analysis	talk	Nick Schmansky
11:15 - 11:45	ROI Analysis Tutorial	tutorial	staff
11:45 - 12:45	lunch	--	--
12:45 - 1:45	Group Analysis / GLM / Multiple Comparisons	talk	J. Eugenio Iglesias
1:45 - 2:15	QDEC demonstration	demo	Nick Schmansky
2:15 - 2:45	break
2:45 - 3:15	Group Analysis / Multiple Comparisons - mri_glmfit Tutorial	tutorial	staff
3:15 - 3:45	Group Analysis - qdec Tutorial	tutorial	staff
3:45 - 4:15	Longitudinal FreeSurfer see also: LongitudinalProcessing	talk	Lilla Zollei
4:15 - 5:00	Freeview Demo, Longitudinal Tutorial	tutorial	staff, Allison Stevens
4:15 - 5:00	Multi-Modal Integration Tutorial	tutorial	staff

Friday, June 29th - Diffusion / Tractography / MoCo / Q&A

Time	Title	Type	Lecturer
9:00 - 9:30	Diffusion Data Processing, dtrecon intro	talk	J. Eugenio Iglesias
9:30 - 10:30	Diffusion Processing Tutorial	tutorial	staff
10:30 - 11:00	break
11:00 - 11:30	TRActs Constrained by UnderLying Anatomy (TRACULA)	talk	Lilla Zollei
11:30 - 12:30	Tracula Tutorial	tutorial	staff
12:30 - 1:30	lunch	--	--
1:30 - 2:00	Motion-compensated neuroanatomical imaging	talk	Andre van der Kouwe
2:00 - 3:00	Quality Checking a Recon	demo	Allison Stevens
3:00 - 3:30	break and evaluations
3:30 - 4:00	Question and Answer Session, FsQuiz	talk	staff

FsTutorial/Amsterdam2012CourseSchedule (last edited 2012-07-30 10:43:32 by NickSchmansky)

-  ⇤ ← Revision 5 as of 2012-02-21 16:58:59 → 
  Size: 5054
  Editor: AllisonStevens
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+   ← Revision 31 as of 2012-07-30 10:43:32 → ⇥
  Size: 5700
  Editor: NickSchmansky
  Comment:
-Deletions are marked like this.
+Additions are marked like this.
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-#acl AdminGroup:read,write,delete,revert All:read
+#acl LcnGroup:read,write,delete,revert All:read
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-=== Wednesday, June 27th - Introduction / Single Subject / Registration / Troubleshooting ===
+Home page: [[http://www.freesurfercourseamsterdam.nl/|www.freesurfercourseamsterdam.nl]]

Hosted by: [[http://www.vumc.com/patientcare/|Dept. of Radiology, VU University Medical Center]]

Venue: [[http://www.griffioen.vu.nl/nl/zaalverhuur/zalen/griffioenzaal.asp]]

Location: [[http://maps.google.com/maps?q=Uilenstede+106,+1183+AM+AMSTELVEEN,+THE+NETHERLANDS&ll=52.319052,4.874411&spn=0.022849,0.034032&oe=utf-8&client=firefox-a&hnear=Uilenstede+106,+Amstelveen,+Noord-Holland,+The+Netherlands&gl=us&t=m&z=15|Google Maps]]

'''[[http://surfer.nmr.mgh.harvard.edu/pub/docs/fscourse_amsterdam_2012.jpg|------------------------------ CLASS PHOTO ------------------------------]]'''

=== Wednesday, June 27th - Introduction / Single Subject / MRI Acquisition / Troubleshooting ===
-Line 9:
+Line 19:
-||8:30 - 9:00 ||'''Course Registration''' ||sign-in || [[attachment:brazil2009.jpg|staff]] ||
||9:00 - 9:30 || [[http://surfer.nmr.mgh.harvard.edu/pub/docs/unix_tutorial_FS_course.ppt|Unix Tutorial for FreeSurfer Users]] [[http://www.ee.surrey.ac.uk/Teaching/Unix|1. Surrey]], [[http://docstore.mik.ua/orelly/linux/lnut/index.htm|2. O'Reilly]] ||tutorial || Allison Stevens ||
||9:30 - 10:00 || [[http://surfer.nmr.mgh.harvard.edu/pub/docs/fsjargon.ppt|Intro to FreeSurfer Jargon|&do=get]] ||talk || Allison Stevens ||
||10:00 - 10:30 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/freesurfer.intro.ppt|Introduction to Freesurfer|&do=get]] ||talk || Nick Schmansky ||
||10:30 - 11:00 || [[http://surfer.nmr.mgh.harvard.edu/pub/docs/freesurfer.applications.ppt|FreeSurfer Applications|&do=get]], [[Articles]] ||talk || Nick Schmansky ||
+||8:30 - 9:45 ||'''Course Registration''' (Note: overlaps with optional tutorials)||sign-in || staff ||
||9:00 - 9:30 ||'''optional -''' [[http://surfer.nmr.mgh.harvard.edu/pub/docs/unix_tutorial_FS_course.ppt|Unix Tutorial for FreeSurfer Users]]   [[http://www.ee.surrey.ac.uk/Teaching/Unix|online practice]]  ||tutorial || Allison Stevens ||
||9:30 - 10:00 || '''optional -''' [[http://surfer.nmr.mgh.harvard.edu/pub/docs/fsjargon.ppt|Intro to FreeSurfer Jargon|&do=get]] ||talk || Allison Stevens ||
||10:00 - 10:30 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/freesurfer.intro.njs.ppt|Introduction to Freesurfer|&do=get]] ||talk || Nick Schmansky ||
||10:30 - 11:00 || [[http://surfer.nmr.mgh.harvard.edu/pub/docs/freesurfer.applications.njs.ppt|FreeSurfer Applications|&do=get]], [[Publications]] ||talk || Nick Schmansky ||
-Line 15:
+Line 25:
-||11:30 - 12:30 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/fsrecon.AS.ppt|Analyzing the Individual Subject]] ||talk || Allison Stevens ||
+||11:30 - 12:30 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/fsreconIglesias.ppt|Analyzing the Individual Subject]] ||talk || J. Eugenio Iglesias ||
-Line 20:
+Line 30:
-||3:30- 4:00 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/freesurfer.failure_modes.AS.ppt|Failure Modes|&do=get]] ||talk || Allison Stevens ||
||4:00 - 4:30 ||Quality Checking a Recon ||demo ||Allison Stevens ||
+||3:30 - 4:00 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/mri_acquisition.ppt|MRI Acquisition Methods for Morphometry|&do=get]] ||talk ||Andre van der Kouwe||
||4:00 - 4:30 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/freesurfer.failure_modes.AS.ppt|Failure Modes|&do=get]] ||talk || Allison Stevens ||
-Line 24:
+Line 34:
-=== Thursday, June 28th - ROIs / Longitudinal / Multimodal / Group Analysis ===
+=== Thursday, June 28th - MRI Basics / Registration / ROIs / Group Analysis/ Longitudinal / Multimodal ===
-Line 26:
+Line 36:
-||9:00 - 10:00 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/freesurfer.groupanalysis.ppt|Group Analysis / GLM / Multiple Comparisons|&do=get]] ||talk || J. Eugenio Iglesias ||
||10:00 - 10:30 ||QDEC demonstration ||demo ||Nick Schmansky ||
+||9:00 - 9:30 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/mri_basics.AVDK.ppt|A Non-physicist's Intro to MR|&do=get]], [[http://surfer.nmr.mgh.harvard.edu/pub/docs/MRI_Hanson/Bloch.swf|Bloch concepts]] ||talk || Andre van der Kouwe||
||9:30 - 10:30 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/fs.multimodal-integration+registration.ppt|Registration & Multimodal Methods|&do=get]]|| talk || Lilla Zollei ||
-Line 29:
+Line 39:
-||10:45 - 11:15 ||[[FsTutorial/GroupAnalysis|Group Analysis / Multiple Comparisons - mri_glmfit Tutorial]] ||tutorial ||staff ||
||11:15 - 11:45 ||[[FsTutorial/QdecGroupAnalysis|Group Analysis - qdec Tutorial]] ||tutorial ||staff ||
||11:45 - 1:00 ||'''lunch''' ||-- ||-- ||
||1:00 - 1:45 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/fs.registration.ppt|Registration Methods|&do=get]]|| talk || Lilla Zollei ||
||2:15 - 2:45 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/freesurfer.longitudinal.ppt|Longitudinal FreeSurfer|&do=get]] ''see also:'' LongitudinalProcessing ||talk || Lilla Zollei ||
||2:45 - 3:00 ||'''break''' || || ||
||3:00 - 3:30 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/fs.roi.AS.ppt|ROI Analysis|&do=get]] ||talk || Allison Stevens ||
||3:30 - 4:00 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/mri_basics.pdf|A Non-physicist's Intro to MR|&do=get]] [[http://www.heartvista.com/SpinBench|SpinBench]] ||talk || Andre van der Kouwe||
||4:00 - 4:30 ||[[FsTutorial/AnatomicalROI|ROI Analysis Tutorial]] ||tutorial ||staff ||
||4:30 - 5:00 ||[[FsTutorial/LongitudinalTutorial|Longitudinal Tutorial]] ||tutorial ||staff ||
+||10:45 - 11:15 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/fs.roi.AS.ppt|ROI Analysis|&do=get]] ||talk || Nick Schmansky ||
||11:15 - 11:45 ||[[FsTutorial/AnatomicalROI|ROI Analysis Tutorial]] ||tutorial ||staff ||
||11:45 - 12:45 ||'''lunch''' ||-- ||-- ||
||12:45 - 1:45 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/freesurfer.groupanalysis.ppt|Group Analysis / GLM / Multiple Comparisons|&do=get]] ||talk || J. Eugenio Iglesias ||
||1:45 - 2:15 ||QDEC demonstration ||demo ||Nick Schmansky ||
||2:15 - 2:45 ||'''break''' || || ||
||2:45 - 3:15 ||[[FsTutorial/GroupAnalysis|Group Analysis / Multiple Comparisons - mri_glmfit Tutorial]] ||tutorial ||staff ||
||3:15 - 3:45 ||[[FsTutorial/QdecGroupAnalysis|Group Analysis - qdec Tutorial]] ||tutorial ||staff ||
||3:45 - 4:15 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/freesurfer.longitudinal.LZ.ppt|Longitudinal FreeSurfer|&do=get]] ''see also:'' LongitudinalProcessing ||talk || Lilla Zollei ||
||4:15 - 5:00 || Freeview Demo, [[FsTutorial/LongitudinalTutorial|Longitudinal Tutorial]] ||tutorial ||staff, Allison Stevens ||
||4:15 - 5:00 ||[[FsTutorial/MultiModal|Multi-Modal Integration Tutorial]] ||tutorial ||staff ||
-Line 40:
+Line 51:
-=== Friday, June 29th - fMRI / Diffusion / Q&A ===
+=== Friday, June 29th - Diffusion / Tractography / MoCo / Q&A ===
-Line 42:
+Line 53:
-||9:00 - 9:30 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/dmri,fs.ppt|Diffusion Data Processing|&do=get]],[[http://surfer.nmr.mgh.harvard.edu/pub/docs/fs.dt_recon-intro.ppt|dtrecon intro|&do=get]] ||talk ||Lilla Zollei ||
+||9:00 - 9:30 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/dmri,fs.ppt|Diffusion Data Processing|&do=get]],  [[http://surfer.nmr.mgh.harvard.edu/pub/docs/fs.dt_recon-intro.ppt|dtrecon intro|&do=get]] ||talk ||J. Eugenio Iglesias ||
-Line 44:
+Line 55:
-||10:30 - 11:00 ||'''break and [[attachment:IMG_4834.JPG|group photo]]''' || || ||
||11:00 - 11:30 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/tracula,fs.ppt|TRActs Constrained by UnderLying Anatomy (TRACULA)|&do=get]] ||talk ||Lilla Zollei||
+||10:30 - 11:00 ||'''break''' || || ||
||11:00 - 11:30 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/tracula,fs.LZ.ppt|TRActs Constrained by UnderLying Anatomy (TRACULA)|&do=get]] ||talk ||Lilla Zollei||
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-||1:30 - 2:00 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/mri_acquisition.ppt|MRI Acquisition Methods for Morphometry|&do=get]] ||talk ||Andre van der Kouwe||
||2:00 - 2:30 ||'''break and [[ https://spreadsheets.google.com/viewform?formkey=dGpBYmJld1hhbXlkRjg0ZHIxblJCeWc6MA|evaluations]]''' || || ||
||2:30 - 3:00 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/tisdall_moco.pdf|Motion-compensated neuroanatomical imaging|&do=get]] ||talk ||Andre van der Kouwe||
||3:00 - 3:30 ||[[http://itunes.apple.com/us/app/isurf-brainview/id381072423?mt=8|iSurf]] and [[attachment:LocalApplicationsFSCourse.ppt|local FreeSurfer Applications]] ||talk ||||
+||1:30 - 2:00 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/tisdall_moco.pdf|Motion-compensated neuroanatomical imaging|&do=get]] ||talk ||Andre van der Kouwe||
||2:00 - 3:00 || Quality Checking a Recon ||demo ||Allison Stevens ||
||3:00 - 3:30 ||'''break and evaluations''' || || ||