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||8:30 - 9:00 ||'''Course Registration''' ||sign-in || [[attachment:brazil2009.jpg|staff]] ||
||9:00 - 9:30 || [[http://surfer.nmr.mgh.harvard.edu/pub/docs/unix_tutorial_FS_course.ppt|Unix Tutorial for FreeSurfer Users]] [[http://www.ee.surrey.ac.uk/Teaching/Unix|1. Surrey]], [[http://docstore.mik.ua/orelly/linux/lnut/index.htm|2. O'Reilly]] ||tutorial || Allison Stevens ||
||9:30 - 10:00 || [[http://surfer.nmr.mgh.harvard.edu/pub/docs/fsjargon.ppt|Intro to FreeSurfer Jargon|&do=get]] ||talk || Allison Stevens ||
||10:00 - 10:30
||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/freesurfer.intro.ppt|Introduction to Freesurfer|&do=get]] ||talk || Nick Schmansky ||
||10:30 - 11:00 || [[http://surfer.nmr.mgh.harvard.edu/pub/docs/freesurfer.applications.ppt|FreeSurfer Applications|&do=get]], [[Articles]] ||talk || Nick Schmansky ||
||11:00 - 11:30 ||'''break''' || || ||
||11:30 - 12:30 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/fsrecon.AS.ppt|Analyzing the Individual Subject]] ||talk || Allison Stevens ||
||12:30 - 1:30 ||'''lunch''' ||-- ||-- ||
||1:30 - 2:00 ||Tkmedit/Tksurfer demonstration ||demo || Nick Schmansky ||
||2:00 - 3:00 ||[[FsTutorial/OutputData|Interaction with Individual Subject Data Tutorial]] ||tutorial ||staff ||
||3:00 - 3:30 ||'''break''' || || ||
||3:30- 4:00 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/freesurfer.failure_modes.AS.ppt|Failure Modes|&do=get]] ||talk || Allison Stevens ||
||4:00 - 4:30 ||Quality Checking a Recon ||demo ||Allison Stevens ||
||4:30 - 5:30 ||Troubleshooting Demonstration, [[FsTutorial/TroubleshootingData|Troubleshooting Tutorial]] ||tutorial ||staff, Allison ||
||8:30 - 9:45 ||'''Course Registration''' ||sign-in || [[attachment:brazil2009.jpg|staff]] ||
||9:00 - 9:30 ||'''optional -''' [[http://surfer.nmr.mgh.harvard.edu/pub/docs/unix_tutorial_FS_course.ppt|Unix Tutorial for FreeSurfer Users]] [[http://www.ee.surrey.ac.uk/Teaching/Unix|online practice]] ||tutorial || Allison Stevens ||
||9:30 - 9:45 || '''optional -''' [[http://surfer.nmr.mgh.harvard.edu/pub/docs/fsjargon.ppt|Intro to FreeSurfer Jargon|&do=get]] ||talk || Allison Stevens ||
||9:45 -
10:15 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/freesurfer.intro.ppt|Introduction to Freesurfer|&do=get]] ||talk || Nick Schmansky ||
||10:15 - 10:45 || [[http://surfer.nmr.mgh.harvard.edu/pub/docs/freesurfer.applications.ppt|FreeSurfer Applications|&do=get]], [[Articles]] ||talk || Nick Schmansky ||
||10:45 - 11:15 ||'''break''' || || ||
||11:15 - 12:15 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/fsrecon.AS.ppt|Analyzing the Individual Subject]] ||talk || J. Eugenio Iglesias ||
||12:15 - 1:15 ||'''lunch''' ||-- ||-- ||
||1:15 - 1:45 ||Tkmedit/Tksurfer demonstration ||demo || Nick Schmansky ||
||1:45 - 2:45 ||[[FsTutorial/OutputData|Interaction with Individual Subject Data Tutorial]] ||tutorial ||staff ||
||2:45 - 3:15 ||'''break''' || || ||
||
3:15 - 3:45 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/mri_acquisition.ppt|MRI Acquisition Methods for Morphometry|&do=get]] ||talk ||Andre van der Kouwe||
||3:45- 4:15 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/freesurfer.failure_modes.AS.ppt|Failure Modes|&do=get]] ||talk || Allison Stevens ||
||4:15 - 5:15 ||Troubleshooting Demonstration, [[FsTutorial/TroubleshootingData|Troubleshooting Tutorial]] ||tutorial ||staff, Allison ||
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||9:00 - 10:00 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/freesurfer.groupanalysis.ppt|Group Analysis / GLM / Multiple Comparisons|&do=get]] ||talk || J. Eugenio Iglesias ||
||10:00 - 10:30 ||QDEC demonstration ||demo ||Nick Schmansky ||
||9:00 - 9:30 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/mri_basics.pdf|A Non-physicist's Intro to MR|&do=get]] ||talk || Andre van der Kouwe||
||9:30 - 10:30 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/fs.registration.ppt|Registration & Multimodal Methods|&do=get]]|| talk || Lilla Zollei ||
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||10:45 - 11:15 ||[[FsTutorial/GroupAnalysis|Group Analysis / Multiple Comparisons - mri_glmfit Tutorial]] ||tutorial ||staff ||
||11:15 - 11:45 ||[[FsTutorial/QdecGroupAnalysis|Group Analysis - qdec Tutorial]] ||tutorial ||staff ||
||11:45 - 1:00 ||'''lunch''' ||-- ||-- ||
||1:00 - 1:45 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/fs.registration.ppt|Registration Methods|&do=get]]|| talk || Lilla Zollei ||
||2:15 - 2:45 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/freesurfer.longitudinal.ppt|Longitudinal FreeSurfer|&do=get]] ''see also:'' LongitudinalProcessing ||talk || Lilla Zollei ||
||2:45 - 3:00 ||'''break''' || || ||
||3:00 - 3:30 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/fs.roi.AS.ppt|ROI Analysis|&do=get]] ||talk || Allison Stevens ||
||3:30 - 4:00 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/mri_basics.pdf|A Non-physicist's Intro to MR|&do=get]] [[http://www.heartvista.com/SpinBench|SpinBench]] ||talk || Andre van der Kouwe||
||4:00 - 4:30 ||[[FsTutorial/AnatomicalROI|ROI Analysis Tutorial]] ||tutorial ||staff ||
||4:30 - 5:00 ||[[FsTutorial/LongitudinalTutorial|Longitudinal Tutorial]] ||tutorial ||staff ||
||10:45 - 11:15 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/fs.roi.AS.ppt|ROI Analysis|&do=get]] ||talk || Nick Schmansky ||
||11:15 - 11:45 ||[[FsTutorial/AnatomicalROI|ROI Analysis Tutorial]] ||tutorial ||staff ||
||11:45 - 12:45 ||'''lunch''' ||-- ||-- ||
||12:45 - 1:45 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/freesurfer.groupanalysis.ppt|Group Analysis / GLM / Multiple Comparisons|&do=get]] ||talk || J. Eugenio Iglesias ||
||1:45 - 2:15 ||QDEC demonstration ||demo ||Nick Schmansky ||
||2:15 - 2:45 ||'''break''' || || ||
||2:45 - 3:15 ||[[FsTutorial/GroupAnalysis|Group Analysis / Multiple Comparisons - mri_glmfit Tutorial]] ||tutorial ||staff ||
||3:15 - 3:45 ||[[FsTutorial/QdecGroupAnalysis|Group Analysis - qdec Tutorial]] ||tutorial ||staff ||
||3:45 - 4:15 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/freesurfer.longitudinal.ppt|Longitudinal FreeSurfer|&do=get]] ''see also:'' LongitudinalProcessing ||talk || Lilla Zollei ||
||4:15 - 5:00 || Freeview Demo, [[FsTutorial/LongitudinalTutorial|Longitudinal Tutorial]] ||tutorial ||staff, Allison Stevens ||
||4:15 - 5:00 ||[[FsTutorial/MultiModal|Multi-Modal Integration Tutorial]] ||tutorial ||staff ||
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||9:00 - 9:30 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/dmri,fs.ppt|Diffusion Data Processing|&do=get]],[[http://surfer.nmr.mgh.harvard.edu/pub/docs/fs.dt_recon-intro.ppt|dtrecon intro|&do=get]] ||talk ||Lilla Zollei || ||9:00 - 9:30 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/dmri,fs.ppt|Diffusion Data Processing|&do=get]],[[http://surfer.nmr.mgh.harvard.edu/pub/docs/fs.dt_recon-intro.ppt|dtrecon intro|&do=get]] ||talk ||J. Eugenio Iglesias ||
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||1:30 - 2:00 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/mri_acquisition.ppt|MRI Acquisition Methods for Morphometry|&do=get]] ||talk ||Andre van der Kouwe||
||2:00 - 2:30 ||'''break and [[ https://spreadsheets.google.com/viewform?formkey=dGpBYmJld1hhbXlkRjg0ZHIxblJCeWc6MA|evaluations]]''' || || ||
||2:30 - 3:00 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/tisdall_moco.pdf|Motion-compensated neuroanatomical imaging|&do=get]] ||talk ||Andre van der Kouwe||
||3:00 - 3:30 ||[[http://itunes.apple.com/us/app/isurf-brainview/id381072423?mt=8|iSurf]] and [[attachment:LocalApplicationsFSCourse.ppt|local FreeSurfer Applications]] ||talk ||||
||1:30 - 2:00 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/tisdall_moco.pdf|Motion-compensated neuroanatomical imaging|&do=get]] ||talk ||Andre van der Kouwe||
||2:00 - 3:00 || Quality Checking a Recon ||demo ||Allison Stevens ||
||3:00 - 3:30 ||'''break and evaluations''' || || ||

FreeSurfer Course, 27-29 June 2012

Amsterdam, Netherlands

Dept. of Radiology, VU University Medical Center

Wednesday, June 27th - Introduction / Single Subject / Registration / Troubleshooting

Time

Title

Type

Lecturer

8:30 - 9:45

Course Registration

sign-in

staff

9:00 - 9:30

optional - Unix Tutorial for FreeSurfer Users online practice

tutorial

Allison Stevens

9:30 - 9:45

optional - Intro to FreeSurfer Jargon

talk

Allison Stevens

9:45 - 10:15

Introduction to Freesurfer

talk

Nick Schmansky

10:15 - 10:45

FreeSurfer Applications, Articles

talk

Nick Schmansky

10:45 - 11:15

break

11:15 - 12:15

Analyzing the Individual Subject

talk

J. Eugenio Iglesias

12:15 - 1:15

lunch

--

--

1:15 - 1:45

Tkmedit/Tksurfer demonstration

demo

Nick Schmansky

1:45 - 2:45

Interaction with Individual Subject Data Tutorial

tutorial

staff

2:45 - 3:15

break

3:15 - 3:45

MRI Acquisition Methods for Morphometry

talk

Andre van der Kouwe

3:45- 4:15

Failure Modes

talk

Allison Stevens

4:15 - 5:15

Troubleshooting Demonstration, Troubleshooting Tutorial

tutorial

staff, Allison

Thursday, June 28th - ROIs / Longitudinal / Multimodal / Group Analysis

Time

Title

Type

Lecturer

9:00 - 9:30

A Non-physicist's Intro to MR

talk

Andre van der Kouwe

9:30 - 10:30

Registration & Multimodal Methods

talk

Lilla Zollei

10:30 - 10:45

break

10:45 - 11:15

ROI Analysis

talk

Nick Schmansky

11:15 - 11:45

ROI Analysis Tutorial

tutorial

staff

11:45 - 12:45

lunch

--

--

12:45 - 1:45

Group Analysis / GLM / Multiple Comparisons

talk

J. Eugenio Iglesias

1:45 - 2:15

QDEC demonstration

demo

Nick Schmansky

2:15 - 2:45

break

2:45 - 3:15

Group Analysis / Multiple Comparisons - mri_glmfit Tutorial

tutorial

staff

3:15 - 3:45

Group Analysis - qdec Tutorial

tutorial

staff

3:45 - 4:15

Longitudinal FreeSurfer see also: LongitudinalProcessing

talk

Lilla Zollei

4:15 - 5:00

Freeview Demo, Longitudinal Tutorial

tutorial

staff, Allison Stevens

4:15 - 5:00

Multi-Modal Integration Tutorial

tutorial

staff

Friday, June 29th - fMRI / Diffusion / Q&A

Time

Title

Type

Lecturer

9:00 - 9:30

Diffusion Data Processing,dtrecon intro

talk

J. Eugenio Iglesias

9:30 - 10:30

Diffusion Processing Tutorial

tutorial

staff

10:30 - 11:00

break

11:00 - 11:30

TRActs Constrained by UnderLying Anatomy (TRACULA)

talk

Lilla Zollei

11:30 - 12:30

Tracula Tutorial

tutorial

staff

12:30 - 1:30

lunch

--

--

1:30 - 2:00

Motion-compensated neuroanatomical imaging

talk

Andre van der Kouwe

2:00 - 3:00

Quality Checking a Recon

demo

Allison Stevens

3:00 - 3:30

break and evaluations

3:30 - 4:00

Question and Answer Session, FsQuiz

talk

staff

FsTutorial/Amsterdam2012CourseSchedule (last edited 2012-07-30 10:43:32 by NickSchmansky)