FreeSurfer Course, 27-29 June 2012

Amsterdam, Netherlands

Wednesday, June 27th - Introduction / Single Subject / Registration / Troubleshooting

Time

Title

Type

Lecturer

8:30 - 9:00

Course Registration

sign-in

staff

9:00 - 9:30

Unix Tutorial for FreeSurfer Users 1. Surrey, 2. O'Reilly

tutorial

Allison Stevens

9:30 - 10:00

Intro to FreeSurfer Jargon

talk

Allison Stevens

10:00 - 10:30

Introduction to Freesurfer

talk

Nick Schmansky

10:30 - 11:00

FreeSurfer Applications, Articles

talk

Nick Schmansky

11:00 - 11:30

break

11:30 - 12:30

Analyzing the Individual Subject

talk

Allison Stevens

12:30 - 1:30

lunch

--

--

1:30 - 2:00

Tkmedit/Tksurfer demonstration

demo

Nick Schmansky

2:00 - 3:00

Interaction with Individual Subject Data Tutorial

tutorial

staff

3:00 - 3:30

break

3:30- 4:00

Failure Modes

talk

Allison Stevens

4:00 - 4:30

Quality Checking a Recon

demo

Allison Stevens

4:30 - 5:30

Troubleshooting Demonstration, Troubleshooting Tutorial

tutorial

staff, Allison

Thursday, June 28th - ROIs / Longitudinal / Multimodal / Group Analysis

Time

Title

Type

Lecturer

9:00 - 10:00

Group Analysis / GLM / Multiple Comparisons

talk

J. Eugenio Iglesias

10:00 - 10:30

QDEC demonstration

demo

Nick Schmansky

10:30 - 10:45

break

10:45 - 11:15

Group Analysis / Multiple Comparisons - mri_glmfit Tutorial

tutorial

staff

11:15 - 11:45

Group Analysis - qdec Tutorial

tutorial

staff

11:45 - 1:00

lunch

--

--

1:00 - 1:45

Registration Methods

talk

Lilla Zollei

2:15 - 2:45

Longitudinal FreeSurfer see also: LongitudinalProcessing

talk

Lilla Zollei

2:45 - 3:00

break

3:00 - 3:30

ROI Analysis

talk

Allison Stevens

3:30 - 4:00

A Non-physicist's Intro to MR SpinBench

talk

Andre van der Kouwe

4:00 - 4:30

ROI Analysis Tutorial

tutorial

staff

4:30 - 5:00

Longitudinal Tutorial

tutorial

staff

Friday, June 29th - fMRI / Diffusion / Q&A

Time

Title

Type

Lecturer

9:00 - 9:30

Diffusion Data Processing,dtrecon intro

talk

Lilla Zollei

9:30 - 10:30

Diffusion Processing Tutorial

tutorial

staff

10:30 - 11:00

break and group photo

11:00 - 11:30

TRActs Constrained by UnderLying Anatomy (TRACULA)

talk

Lilla Zollei

11:30 - 12:30

Tracula Tutorial

tutorial

staff

12:30 - 1:30

lunch

--

--

1:30 - 2:00

MRI Acquisition Methods for Morphometry

talk

Andre van der Kouwe

2:00 - 2:30

break and evaluations

2:30 - 3:00

Motion-compensated neuroanatomical imaging

talk

Andre van der Kouwe

3:00 - 3:30

iSurf and local FreeSurfer Applications

talk

3:30 - 4:00

Question and Answer Session, FsQuiz

talk

staff