FreeSurfer Course, 27-29 June 2012

Amsterdam, Netherlands

Dept. of Radiology, VU University Medical Center

Wednesday, June 27th - Introduction / Single Subject / Registration / Troubleshooting

Time

Title

Type

Lecturer

8:30 - 9:45

Course Registration

sign-in

staff

9:00 - 9:30

optional - Unix Tutorial for FreeSurfer Users online practice

tutorial

Allison Stevens

9:30 - 9:45

optional - Intro to FreeSurfer Jargon

talk

Allison Stevens

9:45 - 10:15

Introduction to Freesurfer

talk

Nick Schmansky

10:15 - 10:45

FreeSurfer Applications, Articles

talk

Nick Schmansky

10:45 - 11:15

break

11:15 - 12:15

Analyzing the Individual Subject

talk

J. Eugenio Iglesias

12:15 - 1:15

lunch

--

--

1:15 - 1:45

Tkmedit/Tksurfer demonstration

demo

Nick Schmansky

1:45 - 2:45

Interaction with Individual Subject Data Tutorial

tutorial

staff

2:45 - 3:15

break

3:15 - 3:45

MRI Acquisition Methods for Morphometry

talk

Andre van der Kouwe

3:45- 4:15

Failure Modes

talk

Allison Stevens

4:15 - 5:15

Troubleshooting Demonstration, Troubleshooting Tutorial

tutorial

staff, Allison

Thursday, June 28th - ROIs / Longitudinal / Multimodal / Group Analysis

Time

Title

Type

Lecturer

9:00 - 9:30

A Non-physicist's Intro to MR

talk

Andre van der Kouwe

9:30 - 10:30

Registration & Multimodal Methods

talk

Lilla Zollei

10:30 - 10:45

break

10:45 - 11:15

ROI Analysis

talk

Nick Schmansky

11:15 - 11:45

ROI Analysis Tutorial

tutorial

staff

11:45 - 12:45

lunch

--

--

12:45 - 1:45

Group Analysis / GLM / Multiple Comparisons

talk

J. Eugenio Iglesias

1:45 - 2:15

QDEC demonstration

demo

Nick Schmansky

2:15 - 2:45

break

2:45 - 3:15

Group Analysis / Multiple Comparisons - mri_glmfit Tutorial

tutorial

staff

3:15 - 3:45

Group Analysis - qdec Tutorial

tutorial

staff

3:45 - 4:15

Longitudinal FreeSurfer see also: LongitudinalProcessing

talk

Lilla Zollei

4:15 - 5:00

Freeview Demo, Longitudinal Tutorial

tutorial

staff, Allison Stevens

4:15 - 5:00

Multi-Modal Integration Tutorial

tutorial

staff

Friday, June 29th - fMRI / Diffusion / Q&A

Time

Title

Type

Lecturer

9:00 - 9:30

Diffusion Data Processing,dtrecon intro

talk

J. Eugenio Iglesias

9:30 - 10:30

Diffusion Processing Tutorial

tutorial

staff

10:30 - 11:00

break

11:00 - 11:30

TRActs Constrained by UnderLying Anatomy (TRACULA)

talk

Lilla Zollei

11:30 - 12:30

Tracula Tutorial

tutorial

staff

12:30 - 1:30

lunch

--

--

1:30 - 2:00

Motion-compensated neuroanatomical imaging

talk

Andre van der Kouwe

2:00 - 3:00

Quality Checking a Recon

demo

Allison Stevens

3:00 - 3:30

break and evaluations

3:30 - 4:00

Question and Answer Session, FsQuiz

talk

staff