Diff for "FsTutorial/April2011CourseSchedule"

Differences between revisions 19 and 48 (spanning 29 versions)

FreeSurfer Course, April 4 - 6, 2011

MGH, Charlestown Navy Yard, Building 149, Conference Room A

Monday, April 4th - Introduction / Single Subject / MRI / Longitudinal/ Troubleshooting

Time	Title	Type	Lecturer
8:00 - 8:30	optional - Unix Tutorial for FreeSurfer Users online practice	tutorial	Allison Stevens
8:30 - 9:00	optional - Intro to FreeSurfer Jargon	talk	Allison Stevens
8:30 - 9:00	Course Registration	sign-in	staff
9:00 - 9:30	Introduction to Freesurfer	talk	Bruce Fischl
9:30 - 10:30	Analyzing the Individual Subject	talk	Doug Greve
10:30 - 10:45	break
10:45 - 11:15	Tkmedit/Tksurfer demonstration	demo	Doug Greve
11:15 - 11:45	Interaction with Individual Subject Data Tutorial	tutorial	staff
11:45- 12:15	Failure Modes	talk	Bruce Fischl
12:15 - 1:15	Lunch (Suggestions)	--	--
12:45 - 1:15	Optional Lunch Talk- A Non-physicist's Intro to MR SpinBench	talk	Dylan Tisdall
1:15 - 2:15	Troubleshooting Demonstration, Troubleshooting Tutorial	tutorial	staff, Allison
2:15 - 2:45	Surface-based Smoothing/Surface-based Registration	talk	Doug Greve
2:45 - 3:15	FreeSurfer Applications	talk	David Salat
3:15 - 3:30	break
3:30 - 4:15	Registration Methods	talk	Lilla Zollei
4:15 - 4:45	Longitudinal FreeSurfer see also: LongitudinalProcessing	talk	Martin Reuter
4:45 - 5:30	Longitudinal Tutorial	tutorial	staff
5:30 -	optional - FreeSurfer Installation on Personal Laptops	one-on-one	staff
5:30 -	optional - Start Processing Your Own Data	one-on-one	staff

Boston Beer Works location information here and here.
Meet us at 6:25pm at the front of Building 149 (the entrance on the opposite side of the building from where the Course is held).
If you miss us, we are taking the 6:30pm MGH/Navy Yard shuttle to North Station (the next one departs at 6:45pm). From there, you cross the street and go down Canal Street. Boston Beer Works will be on your right.

Tuesday, April 5th - Group Analysis/ ROIs / Registration / Diffusion

Time	Title	Type	Lecturer
9:00 - 10:00	Group Analysis / GLM / Multiple Comparisons	talk	Mert Sabuncu
10:00 - 10:30	QDEC demonstration	demo	Nick Schmansky
10:30 - 10:45	break
10:45 - 11:45	Group Analysis / Multiple Comparisons - mri_glmfit Tutorial	tutorial	staff
10:45 - 11:45	Group Analysis - qdec Tutorial	tutorial	staff
11:45 - 12:45	Lunch	--	--
12:15 - 12:45	Optional Lunch Talk- MRI Acquisition Methods for Morphometry	talk	Andre van der Kouwe
12:45 - 1:45	ROI Analysis	talk	Doug Greve
1:45 - 2:15	ROI Analysis Tutorial	tutorial	staff
2:15 - 3:15	Introduction to Diffusion MRI	talk	Anastasia Yendiki
3:15 - 3:30	break
3:30 - 4:15	Diffusion Processing Tutorial	tutorial	staff
4:15 - 4:45	TRActs Constrained by UnderLying Anatomy (TRACULA)	talk	Anastasia Yendiki
4:45 - 5:30	Tracula Tutorial	tutorial	staff
5:30 - 6:00	optional - Quality Checking a Recon	demo	Allison Stevens

Wednesday, April 6th - Multi-Modal / Future Directions / fMRI / Q&A

9:00 - 10:00	Basics of fMRI Analysis	talk	Doug Greve
10:00 - 10:15	break
10:15 - 11:30	FSFAST	talk	Doug Greve
11:30 - 12:30	FSFAST Tutorial	tutorial	staff
12:30 - 1:30	Lunch	--	--
1:00 - 1:30	Optional Lunch Talk- Motion-compensated neuroanatomical imaging	talk	Dylan Tisdall
1:30 - 2:00	Accuracy, Reliability and Validation	talk	David Salat
2:00 - 2:20	Future Directions: Inferring architectonic boundaries from in-vivo MRI	talk	Bruce Fischl
2:20 - 2:45	break & Evaluation
2:45 - 3:45	Multi-Modal Integration	talk	Doug Greve
3:45 - 4:30	Multi-Modal Integration Tutorial	tutorial	staff
4:30 - 5:00	Question and Answer Session, FsQuiz	talk	staff

FsTutorial/April2011CourseSchedule (last edited 2011-04-06 12:35:21 by AllisonStevens)

-  ⇤ ← Revision 19 as of 2011-03-28 07:22:44 → 
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+   ← Revision 48 as of 2011-04-06 12:35:21 → ⇥
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-||8:30 - 9:00 ||'''Course Registration''' ||sign-in ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/boston_fs_course_jan2009.jpg|staff]] ||
+||8:30 - 9:00 ||'''Course Registration''' ||sign-in ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/staff2011.jpg|staff]] ||
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-||11:45- 12:15 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/freesurfer.failure_modes.ppt|Failure Modes]] ||talk ||Bruce Fischl ||
||12:15 - 1:15 ||'''Lunch''' ||-- ||-- ||
||''12:45 - 1:15'' ||''Optional Lunch Talk''- '' [[http://surfer.nmr.mgh.harvard.edu/pub/docs/mri_acquisition.ppt|A Non-physicist's Intro to MR]] '' ||''talk'' ||''Dylan Tisdall'' ||
+||11:45- 12:15 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/freesurfer.failure_modes.ppt|Failure Modes|&do=get]] ||talk ||Bruce Fischl ||
||12:15 - 1:15 ||'''Lunch''' [[attachment:lunch_map.jpg|  (Suggestions)]]||-- ||-- ||
||''12:45 - 1:15'' ||''Optional Lunch Talk''- '' [[http://surfer.nmr.mgh.harvard.edu/pub/docs/mri_basics.pdf|A Non-physicist's Intro to MR|&do=get]] [[http://www.heartvista.com/SpinBench|SpinBench]]'' ||''talk'' ||''Dylan Tisdall'' ||
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-||2:15 - 2:45 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/fs.surface-based-analysis.ppt|Surface-based Smoothing/Surface-based Registration]] ||talk ||Doug Greve ||
||2:45 - 3:15 || [[http://surfer.nmr.mgh.harvard.edu/pub/docs/freesurfer.applications.ppt|FreeSurfer Applications]] ||talk || David Salat ||
+||2:15 - 2:45 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/fs.surface-based-analysis.ppt|Surface-based Smoothing/Surface-based Registration|&do=get]] ||talk ||Doug Greve ||
||2:45 - 3:15 || [[http://surfer.nmr.mgh.harvard.edu/pub/docs/freesurfer.applications.2011.ppt|FreeSurfer Applications|&do=get]] ||talk || David Salat ||
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-||3:30 - 4:15 || Registration Methods || talk || Lilla Zollei ||
||4:15 - 4:45 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/freesurfer.longitudinal.ppt|Longitudinal FreeSurfer]] ''see also:'' LongitudinalProcessing ||talk ||Martin Reuter ||
+||3:30 - 4:15 || [[http://surfer.nmr.mgh.harvard.edu/pub/docs/fs.registration.ppt|Registration Methods|&do=get]] || talk || Lilla Zollei ||
||4:15 - 4:45 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/freesurfer.longitudinal.ppt|Longitudinal FreeSurfer|&do=get]] ''see also:'' LongitudinalProcessing ||talk ||Martin Reuter ||
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-||5:30 - ||'''optional -''' [[http://surfer.nmr.mgh.harvard.edu/pub/docs/runningyourdata.ppt|Start Processing Your Own Data]] ||one-on-one || staff ||
+||5:30 - ||'''optional -''' [[http://surfer.nmr.mgh.harvard.edu/pub/docs/runningyourdata.ppt|Start Processing Your Own Data|&do=get]] ||one-on-one || staff ||

'''Boston Beer Works location information [[http://www.beerworks.net/html/locations_canal.html|here]] and [[http://maps.google.com/maps?f=q&source=s_q&hl=en&geocode=&q=112+Canal+Street+Boston,+MA+02114&aq=&sll=37.0625,-95.677068&sspn=44.25371,54.228516&ie=UTF8&hq=&hnear=112+Canal+St,+Boston,+Massachusetts+02114&ll=42.367359,-71.058776&spn=0.010131,0.013239&z=16|here]].'''<<BR>>
Meet us at 6:25pm at the front of Building 149 (the entrance on the opposite side of the building from where the Course is held). <<BR>>
If you miss us, we are taking the 6:30pm MGH/Navy Yard shuttle to North Station (the next one departs at 6:45pm). From there, you cross the street and go down Canal Street. Boston Beer Works will be on your right.
-Line 36:
+Line 40:
-||''12:15 - 12:45'' ||''Optional Lunch Talk''- ''[[http://surfer.nmr.mgh.harvard.edu/pub/docs/mri_acquisition.ppt|MRI Acquisition Methods for Morphometry]]'' ||''talk'' ||''Andre van der Kouwe'' ||
||12:45 - 1:45  ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/fs.roi.ppt|ROI Analysis]] ||talk ||Doug Greve ||
+||''12:15 - 12:45'' ||''Optional Lunch Talk''- ''[[http://surfer.nmr.mgh.harvard.edu/pub/docs/mri_acquisition.ppt|MRI Acquisition Methods for Morphometry|&do=get]]'' ||''talk'' ||''Andre van der Kouwe'' ||
||12:45 - 1:45  ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/fs.roi.ppt|ROI Analysis|&do=get]] ||talk ||Doug Greve ||
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+Line 43:
-||2:15 - 3:15 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/fs.dt_recon-intro.ppt|Diffusion Data Processing]] ||talk ||Anastasia Yendiki ||
+||2:15 - 3:15 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/dmri,fs.ppt|Introduction to Diffusion MRI|&do=get]] ||talk ||Anastasia Yendiki ||
-Line 41:
+Line 45:
-||3:30 - 4:00 ||Diffusion Processing Tutorial ||tutorial ||staff ||
||4:00 - 4:30 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/tracula,fs.ppt|TRActs Constrained by UnderLying Anatomy (TRACULA)]] ||talk ||Anastasia Yendiki ||
||4:30 - 5:00 ||Tracula Tutorial ||tutorial ||staff ||
||5:00 - 5:30 ||'''optional -''' Quality Checking a Recon ||demo ||Allison Stevens ||
+||3:30 - 4:15 ||[[FsTutorial/Diffusion|Diffusion Processing Tutorial]] ||tutorial ||staff ||
||4:15 - 4:45 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/tracula,fs.ppt|TRActs Constrained by UnderLying Anatomy (TRACULA)|&do=get]] ||talk ||Anastasia Yendiki ||
||4:45 - 5:30 ||[[FsTutorial/Tracula|Tracula Tutorial]] ||tutorial ||staff ||
||5:30 - 6:00 ||'''optional -''' Quality Checking a Recon ||demo ||Allison Stevens ||
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-||8:30 - 9:45 || Basics of fMRI Analysis ||talk ||Doug Greve ||
||9:45 - 10:00 ||'''break''' || || ||
||10:00 - 11:00 ||FSFAST ||talk ||Doug Greve ||
||11:00 - 12:00 ||FSFAST ||tutorial ||staff ||
||12:00 - 1:00 ||'''Lunch''' ||-- ||-- ||
||''12:40 - 1:00'' ||''Optional Lunch Talk''- ''[[http://surfer.nmr.mgh.harvard.edu/pub/docs/tisdall_moco.pdf|Motion-compensated neuroanatomical imaging]]'' ||''talk'' ||''Dylan Tisdall'' ||
||1:00 - 1:30 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/freesurfer.reliability.ppt|Accuracy, Reliability and Validation]] ||talk ||David Salat ||
||1:30 - 1:50 ||Future Directions: [[http://surfer.nmr.mgh.harvard.edu/pub/docs/freesurfer.inferring_architectonics.ppt|Inferring architectonic boundaries from in-vivo MRI]] ||talk ||Bruce Fischl ||
||1:50 - 2:15 ||'''break''' & Evaluation || || ||
||2:15 - 3:30 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/fs.multimodal-integration.ppt|Multi-Modal Integration]] ||talk ||Doug Greve ||
||3:30 - 4:30 ||[[FsTutorial/MultiModal|Multi-Modal Integration Tutorial]] ||tutorial ||staff ||
+||9:00 - 10:00 || [[http://surfer.nmr.mgh.harvard.edu/pub/docs/fmri.april2011.pdf|Basics of fMRI Analysis|&do=get]] ||talk ||Doug Greve ||
||10:00 - 10:15 ||'''break''' || || ||
||10:15 - 11:30 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/fsfast.april2011.ppt|FSFAST|&do=get]] ||talk ||Doug Greve ||
||11:30 - 12:30 ||[[FsFastTutorialV5.1|FSFAST Tutorial]] ||tutorial ||staff ||
||12:30 - 1:30 ||'''Lunch''' ||-- ||-- ||
||''1:00 - 1:30'' ||''Optional Lunch Talk''- ''[[http://surfer.nmr.mgh.harvard.edu/pub/docs/motion_correction.pdf|Motion-compensated neuroanatomical imaging|&do=get]]'' ||''talk'' ||''Dylan Tisdall'' ||
||1:30 - 2:00 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/freesurfer.reliability.ppt|Accuracy, Reliability and Validation|&do=get]] ||talk ||David Salat ||
||2:00 - 2:20 ||Future Directions: [[http://surfer.nmr.mgh.harvard.edu/pub/docs/freesurfer.inferring_architectonics.ppt|Inferring architectonic boundaries from in-vivo MRI|&do=get]] ||talk ||Bruce Fischl ||
||2:20 - 2:45 ||'''break''' & [[https://spreadsheets.google.com/viewform?formkey=dGlVV3Bzb296bnBWN3lBc3l5U3lPUGc6MA|Evaluation]] || || ||
||2:45 - 3:45 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/fs.multimodal-integration.ppt|Multi-Modal Integration|&do=get]] ||talk ||Doug Greve ||
||3:45 - 4:30 ||[[FsTutorial/MultiModal|Multi-Modal Integration Tutorial]] ||tutorial ||staff ||
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+##'''The !FreeSurfer Evaluation is [[https://spreadsheets.google.com/viewform?formkey=dHM0ZWFSY0owUVoyQmpMR3NTWUt2SHc6MA|here]]!'''