Details for the FreeSurfer Course in Barcelona, Spain, September 5-8 2017

This course will be held at Universitat Pompeu Fabra in Barcelona (Roc Boronat, 138, 08018, Barcelona, Spain).

Course organized by BarcelonaBeta Brain Research Center (BBRC) and Universidad Carlos III de Madrid (UC3M) with the support of Universitat Pompeu Fabra (UPF).

Barcelona Course Details

Click on any of the topics below for more information:
Course Schedule
Payment
FAQ
Lecturers
Accommodations

Course Schedule

* Indicates an optional technical talk. These talks have great content. They are related to, but not directly about, the FreeSurfer processing stream.
** Indicates an optional talk that covers basic/beginner material.

Tuesday, September 5th - Introduction / Single Subject Analysis / ROI Analysis

Time

Title

Type

Lecturer

9:00 - 9:30

** Intro to Linux for FreeSurfer Users

talk/demo

Emma Boyd

9:30 - 9:45

** Intro to FreeSurfer Jargon

talk

Emma Boyd

9:45 - 10:15

Introduction to Freesurfer

talk

Anastasia Yendiki

10:15 - 11:25

Analyzing the Individual Subject

talk

Emma Boyd

11:25 - 11:45

break

11:45 - 12:00

Freeview demonstration

demo

Emma Boyd

12:00 - 12:30

Interaction with Individual Subject Data Tutorial

talk

Emma Boyd

12:30 - 12:45

Interaction with Individual Subject Data Tutorial

tutorial

staff

12:45 - 13:15

Surface-based Analysis: Intersubject Registration & Smoothing

talk

TBD

13:15 - 14:45

Lunch

--

--

14:45 - 15:45

ROI Analysis

talk

TBD

15:45 - 16:25

ROI Analysis Tutorial

tutorial

staff

16:25 - 16:55

** A Non-physicist's Intro to MR

talk

Emma Boyd

Wednesday, September 6th - Group Analysis / Longitudinal Analysis / Troubleshooting

Time

Title

Type

Lecturer

9:00 - 9:50

Group Analysis

talk

Isik Karahanoglu

9:50 - 10:30

Group Analysis Tutorial

tutorial

staff

10:30 - 10:50

Multiple Comparisons

talk

Isik Karahanoglu

10:50 - 11:10

Multiple Comparisons Tutorial

tutorial

staff

11:10 - 11:30

break

11:30 - 12:00

FreeSurfer Troubleshooting

talk

Emma Boyd

12:00 - 13:00

Troubleshooting Tutorial

tutorial

staff

13:00 - 14:00

Quality Checking a Recon

demo

Emma Boyd

14:00 - 15:30

Lunch

--

--

15:30 - 16:15

Longitudinal FreeSurfer see also: LongitudinalProcessing

talk

Anastasia Yendiki

16:15 - 16:45

Longitudinal Tutorial

tutorial

staff

TBD

Barcelona social night

social activity

you!

Thursday, September 7th - Multimodal Analysis / Diffusion Analysis / fMRI Analysis / MR Acquisition

Time

Title

Type

Lecturer

9:00 - 9:30

Multi-Modal Integration, Part 1: Registration

talk

TBD

9:30 - 10:00

Multi-Modal Integration Tutorial, Part 1

tutorial

staff

10:00 - 10:40

Introduction to Diffusion MRI

talk

Anastasia Yendiki

10:40 - 11:25

Diffusion Processing Tutorial

tutorial

staff

11:25 - 11:45

break

--

--

11:45 - 12:35

TRActs Constrained by UnderLying Anatomy (TRACULA)

talk

Anastasia Yendiki

12:35 - 13:35

Tracula Tutorial

tutorial

staff

13:35 - 13:45

Longitudinal TRACULA

talk

Anastasia Yendiki

13:45 - 15:15

break

15:15 - 16:15

Basics of fMRI Analysis

talk

Isik Karahanoglu

Friday, September 8th - fMRI Analysis / Multimodal Analysis / Future Directions

Time

Title

Type

Lecturer

9:00 - 9:30

FSFAST, Part 1: Preprocessing

talk

Isik Karahanoglu

9:30 - 10:00

FSFAST Tutorial, Part 1

tutorial

staff

10:00 - 11:00

FSFAST, Part 2: GLM Analysis]]

talk

Isik Karahanoglu

11:20 - 11:40

FSFAST Tutorial, Part 2

tutorial

staff

11:40 - 12:00

break & evaluation form

--

--

12:00 - 12:30

Multi-Modal Integration, Part 2: Group Analysis

talk

Anastasia Yendiki

12:30 - 13:00

Multi-Modal Integration Tutorial, Part 2

tutorial

staff

13:00 - 13:30

Future Directions

talk

Anastasia Yendiki

* Indicates an optional technical talk. These talks have great content. They are related to, but not directly about, the FreeSurfer processing stream.
** Indicates an optional talk covering basic/beginner material.

Payment

Cost and Deadlines

The fee for the course is €800 for post-doctorates and other researchers. A reduced rate of €500 is available to undergraduate and graduate students (pre-doctorate). MDs, PhDs, and research assistants do not qualify for the student rate. Payment must be submitted as soon as possible to ensure successful registration. The payment deadline is June 30th, 2017 for both payment forms (credit card and bank transfer). In the particular case of bank transfer, once payment has been completed, please send proof of payment to Julieta Pereda (jpereda@red-innova.es) to confirm you your spot. If payment has not been received by the deadline or you have not contacted Julieta by that date, your spot will be opened to the waiting list. You will be contacted by us before we do so.

Course fees are refundable up to the payment deadline. A €200 fee will be deducted, should you request a refund before July 15th, 2017. After that, you will not receive a refund but you can send someone in your place.

Once you complete and submit the registration form below, you will receive an email confirming your registration. This email will also contain instructions for completing payment through Universitat Pompeu Fabra's event website. If you do not receive an email confirmation, please contact Julieta.

Questions about payment? Contact Julieta Pereda (jpereda@red-innova.es) Questions about registration and course content? Contact Emma Boyd (eboyd2@mgh.harvard.edu)

FAQ

  1. How many individuals are accepted into the Barcelona course?

    • 60 people
  2. Do postdocs qualify for the student rate?

    • No, sorry.
  3. The course is full. Can you register me for the next one?

    • You can sign up for our course mailing list and you will be notified when registration for the next course opens (that list is here). You can also register for the currently full course to be put on the waiting list for it. This does not however automatically get you a spot in the next course.

  4. Can I get a receipt for the course?

    • Sure! Paper receipts will be available on the first day of the course. If you need a receipt or invoice before then to get a check issued or reimbursed, please use the confirmation email you received when you registered for the course.
  5. How do I know if my payment went through?

    • Julieta will contact you when payment is received.
  6. Do I get any credits for taking this course?

    • No, but we will give you a certificate to prove you took it.
  7. Can I bring my own laptop to work on instead of sharing with someone else?

    • If any issues arise during the tutorial sessions which are unique to your laptop, we will not be able to troubleshoot those issues for you (it takes staff away from answering general tutorial questions). We strongly discourage using your own laptop instead of the ones we provide. If you insist on working on your laptop, please thoroughly test your installation ahead of time - guidelines for this can be found on the TestingFreeSurfer wiki. It might also be a good idea to try to run all the commands in the tutorials (here).

Accommodations

Details to come.