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||10:30 - 10:45 ||'''break''' || || || ||10:45 - 11:15 ||Tkmedit/Tksurfer demonstration ||demo ||Doug Greve || ||11:15 - 11:45 ||[[FsTutorial/OutputData|Interaction with Individual Subject Data Tutorial]] ||tutorial ||staff || |
||10:30 - 10:50 ||'''break''' || || || ||10:50 - 11:20 ||Tkmedit/Tksurfer demonstration ||demo ||Doug Greve || ||11:20 - 11:50 ||[[FsTutorial/OutputData|Interaction with Individual Subject Data Tutorial]] ||tutorial ||staff || ||11:50 - 12:30 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/fs.surface-based-analysis.ppt|Surface-based Smoothing/Surface-based Registration|&do=get]] ||talk ||Doug Greve || ||12:30 - 1:30 ||'''Lunch''' [[attachment:lunch_map.jpg| (Suggestions)]]||-- ||-- || ||''1:00 - 1:30'' ||''Optional Lunch Talk''- '' [[http://surfer.nmr.mgh.harvard.edu/pub/docs/mri_basics.pdf|A Non-physicist's Intro to MR|&do=get]] [[http://www.heartvista.com/SpinBench|SpinBench]]'' ||''talk'' ||''Dylan Tisdall'' || ||3:30 - 4:15 || [[http://surfer.nmr.mgh.harvard.edu/pub/docs/fs.registration.ppt|Registration Methods|&do=get]] || talk || Lilla Zollei || |
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||12:15 - 1:15 ||'''Lunch''' [[attachment:lunch_map.jpg| (Suggestions)]]||-- ||-- || ||''12:45 - 1:15'' ||''Optional Lunch Talk''- '' [[http://surfer.nmr.mgh.harvard.edu/pub/docs/mri_basics.pdf|A Non-physicist's Intro to MR|&do=get]] [[http://www.heartvista.com/SpinBench|SpinBench]]'' ||''talk'' ||''Dylan Tisdall'' || |
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||2:15 - 2:45 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/fs.surface-based-analysis.ppt|Surface-based Smoothing/Surface-based Registration|&do=get]] ||talk ||Doug Greve || ||2:45 - 3:15 || [[http://surfer.nmr.mgh.harvard.edu/pub/docs/freesurfer.applications.2011.ppt|FreeSurfer Applications|&do=get]] ||talk || David Salat || |
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||3:30 - 4:15 || [[http://surfer.nmr.mgh.harvard.edu/pub/docs/fs.registration.ppt|Registration Methods|&do=get]] || talk || Lilla Zollei || ||4:15 - 4:45 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/freesurfer.longitudinal.ppt|Longitudinal FreeSurfer|&do=get]] ''see also:'' LongitudinalProcessing ||talk ||Martin Reuter || ||4:45 - 5:30 ||[[FsTutorial/LongitudinalTutorial|Longitudinal Tutorial]] ||tutorial ||staff || |
||5:30 - 6:00 || Quality Checking a Recon ||demo ||Allison Stevens || |
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||2:00 - 2:20 ||Future Directions: [[http://surfer.nmr.mgh.harvard.edu/pub/docs/freesurfer.inferring_architectonics.ppt|Inferring architectonic boundaries from in-vivo MRI|&do=get]] ||talk ||Bruce Fischl || | |
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||2:15 - 3:15 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/dmri,fs.ppt|Introduction to Diffusion MRI|&do=get]] ||talk ||Anastasia Yendiki || | |
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||3:30 - 4:15 ||[[FsTutorial/Diffusion|Diffusion Processing Tutorial]] ||tutorial ||staff || ||4:15 - 4:45 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/tracula,fs.ppt|TRActs Constrained by UnderLying Anatomy (TRACULA)|&do=get]] ||talk ||Anastasia Yendiki || ||4:45 - 5:30 ||[[FsTutorial/Tracula|Tracula Tutorial]] ||tutorial ||staff || ||5:30 - 6:00 ||'''optional -''' Quality Checking a Recon ||demo ||Allison Stevens || |
||4:15 - 4:45 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/freesurfer.longitudinal.ppt|Longitudinal FreeSurfer|&do=get]] ''see also:'' LongitudinalProcessing ||talk ||Martin Reuter || ||4:45 - 5:30 ||[[FsTutorial/LongitudinalTutorial|Longitudinal Tutorial]] ||tutorial ||staff || ||2:45 - 3:45 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/fs.multimodal-integration.ppt|Multi-Modal Integration|&do=get]] ||talk ||Doug Greve || ||3:45 - 4:30 ||[[FsTutorial/MultiModal|Multi-Modal Integration Tutorial]] ||tutorial ||staff || |
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||1:30 - 2:00 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/freesurfer.reliability.ppt|Accuracy, Reliability and Validation|&do=get]] ||talk ||David Salat || ||2:00 - 2:20 ||Future Directions: [[http://surfer.nmr.mgh.harvard.edu/pub/docs/freesurfer.inferring_architectonics.ppt|Inferring architectonic boundaries from in-vivo MRI|&do=get]] ||talk ||Bruce Fischl || |
||2:15 - 3:15 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/dmri,fs.ppt|Introduction to Diffusion MRI|&do=get]] ||talk ||Anastasia Yendiki || ||3:30 - 4:15 ||[[FsTutorial/Diffusion|Diffusion Processing Tutorial]] ||tutorial ||staff || |
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||2:45 - 3:45 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/fs.multimodal-integration.ppt|Multi-Modal Integration|&do=get]] ||talk ||Doug Greve || ||3:45 - 4:30 ||[[FsTutorial/MultiModal|Multi-Modal Integration Tutorial]] ||tutorial ||staff || |
||4:15 - 4:45 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/tracula,fs.ppt|TRActs Constrained by UnderLying Anatomy (TRACULA)|&do=get]] ||talk ||Anastasia Yendiki || ||4:45 - 5:30 ||[[FsTutorial/Tracula|Tracula Tutorial]] ||tutorial ||staff || |
FreeSurfer Course, December 12-14, 2011
MGH, Charlestown Navy Yard, Building 149, Conference Room A
Monday, December 12th - Introduction / Single Subject / MRI / Longitudinal/ Troubleshooting
Time |
Title |
Type |
Lecturer |
8:00 - 8:30 |
optional - Unix Tutorial for FreeSurfer Users online practice |
tutorial |
Allison Stevens |
8:30 - 9:00 |
optional - Intro to FreeSurfer Jargon |
talk |
Allison Stevens |
8:30 - 9:00 |
Course Registration |
sign-in |
|
9:00 - 9:30 |
talk |
Bruce Fischl |
|
9:30 - 10:30 |
talk |
Doug Greve |
|
10:30 - 10:50 |
break |
|
|
10:50 - 11:20 |
Tkmedit/Tksurfer demonstration |
demo |
Doug Greve |
11:20 - 11:50 |
tutorial |
staff |
|
11:50 - 12:30 |
talk |
Doug Greve |
|
12:30 - 1:30 |
Lunch (Suggestions) |
-- |
-- |
1:00 - 1:30 |
Optional Lunch Talk- A Non-physicist's Intro to MR SpinBench |
talk |
Dylan Tisdall |
3:30 - 4:15 |
talk |
Lilla Zollei |
|
11:45- 12:15 |
talk |
Bruce Fischl |
|
1:15 - 2:15 |
Troubleshooting Demonstration, Troubleshooting Tutorial |
tutorial |
staff, Allison |
3:15 - 3:30 |
break |
|
|
5:30 - 6:00 |
Quality Checking a Recon |
demo |
Allison Stevens |
5:30 - |
optional - FreeSurfer Installation on Personal Laptops |
one-on-one |
staff |
5:30 - |
optional - Start Processing Your Own Data |
one-on-one |
staff |
Boston Beer Works location information here and here.
Meet us at 6:25pm at the front of Building 149 (the entrance on the opposite side of the building from where the Course is held).
If you miss us, we are taking the 6:30pm MGH/Navy Yard shuttle to North Station (the next one departs at 6:45pm). From there, you cross the street and go down Canal Street. Boston Beer Works will be on your right.
Tuesday, April 5th - Group Analysis/ ROIs / Registration / Diffusion
Time |
Title |
Type |
Lecturer |
9:00 - 10:00 |
talk |
Mert Sabuncu |
|
10:00 - 10:30 |
QDEC demonstration |
demo |
Nick Schmansky |
10:30 - 10:45 |
break |
|
|
10:45 - 11:45 |
tutorial |
staff |
|
10:45 - 11:45 |
tutorial |
staff |
|
11:45 - 12:45 |
Lunch |
-- |
-- |
12:15 - 12:45 |
Optional Lunch Talk- MRI Acquisition Methods for Morphometry |
talk |
Andre van der Kouwe |
2:00 - 2:20 |
Future Directions: Inferring architectonic boundaries from in-vivo MRI |
talk |
Bruce Fischl |
12:45 - 1:45 |
talk |
Doug Greve |
|
1:45 - 2:15 |
tutorial |
staff |
|
3:15 - 3:30 |
break |
|
|
4:15 - 4:45 |
talk |
Martin Reuter |
|
4:45 - 5:30 |
tutorial |
staff |
|
2:45 - 3:45 |
talk |
Doug Greve |
|
3:45 - 4:30 |
tutorial |
staff |
Wednesday, April 6th - Multi-Modal / Future Directions / fMRI / Q&A
9:00 - 10:00 |
talk |
Doug Greve |
|
10:00 - 10:15 |
break |
|
|
10:15 - 11:30 |
talk |
Doug Greve |
|
11:30 - 12:30 |
tutorial |
staff |
|
12:30 - 1:30 |
Lunch |
-- |
-- |
1:00 - 1:30 |
Optional Lunch Talk- Motion-compensated neuroanatomical imaging |
talk |
Dylan Tisdall |
2:15 - 3:15 |
talk |
Anastasia Yendiki |
|
3:30 - 4:15 |
tutorial |
staff |
|
2:20 - 2:45 |
break & Evaluation |
|
|
4:15 - 4:45 |
talk |
Anastasia Yendiki |
|
4:45 - 5:30 |
tutorial |
staff |
|
4:30 - 5:00 |
Question and Answer Session, FsQuiz |
talk |
staff |