Diff for "FsTutorial/Dec2011CourseSchedule"

Differences between revisions 2 and 3

FreeSurfer Course, December 12-14, 2011

MGH, Charlestown Navy Yard, Building 149, Conference Room A

Monday, December 12th - Introduction / Single Subject / MRI / Longitudinal/ Troubleshooting

Time	Title	Type	Lecturer
8:00 - 8:30	optional - Unix Tutorial for FreeSurfer Users online practice	tutorial	Allison Stevens
8:30 - 9:00	optional - Intro to FreeSurfer Jargon	talk	Allison Stevens
8:30 - 9:00	Course Registration	sign-in	staff
9:00 - 9:30	Introduction to Freesurfer	talk	Bruce Fischl
9:30 - 10:30	Analyzing the Individual Subject	talk	Doug Greve
10:30 - 10:50	break
10:50 - 11:20	Tkmedit/Tksurfer demonstration	demo	Doug Greve
11:20 - 11:50	Interaction with Individual Subject Data Tutorial	tutorial	staff
11:50 - 12:30	Surface-based Smoothing/Surface-based Registration	talk	Doug Greve
12:30 - 1:30	Lunch (Suggestions)	--	--
1:00 - 1:30	Optional Lunch Talk- A Non-physicist's Intro to MR SpinBench	talk	Dylan Tisdall
1:30 - 2:15	Registration Methods	talk	Lilla Zollei
2:15- 2:55	Failure Modes	talk	Bruce Fischl
2:55 - 3:15	break
3:15 - 3:35	Troubleshooting Demonstration	demo	Allison
3:35 - 4:35	Troubleshooting Tutorial	tutorial	staff
4:35 - 5:30	Quality Checking a Recon	demo	Allison Stevens
5:30 -	optional - FreeSurfer Installation on Personal Laptops	one-on-one	staff
5:30 -	optional - Start Processing Your Own Data	one-on-one	staff

Boston Beer Works location information here and here.
Meet us at 6:25pm at the front of Building 149 (the entrance on the opposite side of the building from where the Course is held).
If you miss us, we are taking the 6:30pm MGH/Navy Yard shuttle to North Station (the next one departs at 6:45pm). From there, you cross the street and go down Canal Street. Boston Beer Works will be on your right.

Tuesday, April 5th - Group Analysis/ ROIs / Registration / Diffusion

Time	Title	Type	Lecturer
9:00 - 10:00	Group Analysis / GLM / Multiple Comparisons	talk	Mert Sabuncu
10:00 - 10:30	QDEC demonstration	demo	Nick Schmansky
10:30 - 10:50	break
10:50 - 11:50	Group Analysis / Multiple Comparisons - mri_glmfit Tutorial	tutorial	staff
10:50 - 11:50	Group Analysis - qdec Tutorial	tutorial	staff
11:50 - 12:50	Lunch	--	--
12:15 - 12:45	Optional Lunch Talk- MRI Acquisition Methods for Morphometry	talk	Andre van der Kouwe
12:50 - 1:20	Future Directions: Inferring architectonic boundaries from in-vivo MRI	talk	Bruce Fischl
1:20 - 2:20	ROI Analysis	talk	Doug Greve
2:20 - 2:50	ROI Analysis Tutorial	tutorial	staff
2:50 - 3:10	break
3:10 - 3:40	Longitudinal FreeSurfer see also: LongitudinalProcessing	talk	Martin Reuter
3:40 - 4:30	Longitudinal Tutorial	tutorial	staff
4:30 - 5:30	Multi-Modal Integration	talk	Doug Greve
5:30 - 6:15	Multi-Modal Integration Tutorial	tutorial	staff

9:00 - 10:00	Basics of fMRI Analysis	talk	Doug Greve
10:00 - 10:20	break
10:20 - 11:40	FSFAST	talk	Doug Greve
11:40 - 12:40	FSFAST Tutorial	tutorial	staff
12:40 - 1:40	Lunch	--	--
1:10 - 1:40	Optional Lunch Talk- Motion-compensated neuroanatomical imaging	talk	Dylan Tisdall
1:40 - 2:40	Introduction to Diffusion MRI	talk	Anastasia Yendiki
2:40 - 3:25	Diffusion Processing Tutorial	tutorial	staff
3:25 - 3:45	break & Evaluation
3:45 - 4:15	TRActs Constrained by UnderLying Anatomy (TRACULA)	talk	Anastasia Yendiki
4:15 - 5:00	Tracula Tutorial	tutorial	staff
5:00 - 5:30	Question and Answer Session, FsQuiz	talk	staff

FsTutorial/Dec2011CourseSchedule (last edited 2011-12-14 13:58:53 by NickSchmansky)

-Deletions are marked like this.
+Additions are marked like this.
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-||3:30 - 4:15 || [[http://surfer.nmr.mgh.harvard.edu/pub/docs/fs.registration.ppt|Registration Methods|&do=get]] || talk || Lilla Zollei ||

||11:45- 12:15 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/freesurfer.failure_modes.ppt|Failure Modes|&do=get]] ||talk ||Bruce Fischl ||

||1:15 - 2:15 ||Troubleshooting Demonstration, [[FsTutorial/TroubleshootingData|Troubleshooting Tutorial]] ||tutorial ||staff, Allison ||

||3:15 - 3:30 ||'''break''' || || ||

||5:30 - 6:00 || Quality Checking a Recon ||demo ||Allison Stevens ||
+||1:30 - 2:15 || [[http://surfer.nmr.mgh.harvard.edu/pub/docs/fs.registration.ppt|Registration Methods|&do=get]] || talk || Lilla Zollei ||

||2:15- 2:55 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/freesurfer.failure_modes.ppt|Failure Modes|&do=get]] ||talk ||Bruce Fischl ||

||2:55 - 3:15 ||'''break''' || || ||

||3:15 - 3:35 ||Troubleshooting Demonstration || demo || Allison ||

||3:35 - 4:35 || [[FsTutorial/TroubleshootingData|Troubleshooting Tutorial]] ||tutorial ||staff ||

||4:35 - 5:30 || Quality Checking a Recon ||demo ||Allison Stevens ||
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-||10:30 - 10:45 ||'''break''' || || ||

||10:45 - 11:45 ||[[FsTutorial/GroupAnalysis|Group Analysis / Multiple Comparisons - mri_glmfit Tutorial]] ||tutorial ||staff ||

||10:45 - 11:45 ||[[FsTutorial/QdecGroupAnalysis|Group Analysis - qdec Tutorial]] ||tutorial ||staff ||

||11:45 - 12:45 ||'''Lunch''' ||-- ||-- ||
+||10:30 - 10:50 ||'''break''' || || ||

||10:50 - 11:50 ||[[FsTutorial/GroupAnalysis|Group Analysis / Multiple Comparisons - mri_glmfit Tutorial]] ||tutorial ||staff ||

||10:50 - 11:50 ||[[FsTutorial/QdecGroupAnalysis|Group Analysis - qdec Tutorial]] ||tutorial ||staff ||

||11:50 - 12:50 ||'''Lunch''' ||-- ||-- ||
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-||2:00 - 2:20 ||Future Directions: [[http://surfer.nmr.mgh.harvard.edu/pub/docs/freesurfer.inferring_architectonics.ppt|Inferring architectonic boundaries from in-vivo MRI|&do=get]] ||talk ||Bruce Fischl ||

||12:45 - 1:45  ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/fs.roi.ppt|ROI Analysis|&do=get]] ||talk ||Doug Greve ||

||1:45 - 2:15 ||[[FsTutorial/AnatomicalROI|ROI Analysis Tutorial]] ||tutorial ||staff ||

||3:15 - 3:30 ||'''break''' || || ||

||4:15 - 4:45 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/freesurfer.longitudinal.ppt|Longitudinal FreeSurfer|&do=get]] ''see also:'' LongitudinalProcessing ||talk ||Martin Reuter ||

||4:45 - 5:30 ||[[FsTutorial/LongitudinalTutorial|Longitudinal Tutorial]] ||tutorial ||staff ||

||2:45 - 3:45 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/fs.multimodal-integration.ppt|Multi-Modal Integration|&do=get]] ||talk ||Doug Greve ||

||3:45 - 4:30 ||[[FsTutorial/MultiModal|Multi-Modal Integration Tutorial]] ||tutorial ||staff ||
+||12:50 - 1:20 ||Future Directions: [[http://surfer.nmr.mgh.harvard.edu/pub/docs/freesurfer.inferring_architectonics.ppt|Inferring architectonic boundaries from in-vivo MRI|&do=get]] ||talk ||Bruce Fischl ||

||1:20 - 2:20  ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/fs.roi.ppt|ROI Analysis|&do=get]] ||talk ||Doug Greve ||

||2:20 - 2:50 ||[[FsTutorial/AnatomicalROI|ROI Analysis Tutorial]] ||tutorial ||staff ||

||2:50 - 3:10 ||'''break''' || || ||

||3:10 - 3:40 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/freesurfer.longitudinal.ppt|Longitudinal FreeSurfer|&do=get]] ''see also:'' LongitudinalProcessing ||talk ||Martin Reuter ||

||3:40 - 4:30 ||[[FsTutorial/LongitudinalTutorial|Longitudinal Tutorial]] ||tutorial ||staff ||

||4:30 - 5:30 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/fs.multimodal-integration.ppt|Multi-Modal Integration|&do=get]] ||talk ||Doug Greve ||

||5:30 - 6:15 ||[[FsTutorial/MultiModal|Multi-Modal Integration Tutorial]] ||tutorial ||staff ||
-Line 51:
+Line 52:
-||10:00 - 10:15 ||'''break''' || || ||

||10:15 - 11:30 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/fsfast.april2011.ppt|FSFAST|&do=get]] ||talk ||Doug Greve ||

||11:30 - 12:30 ||[[FsFastTutorialV5.1|FSFAST Tutorial]] ||tutorial ||staff ||

||12:30 - 1:30 ||'''Lunch''' ||-- ||-- ||

||''1:00 - 1:30'' ||''Optional Lunch Talk''- ''[[http://surfer.nmr.mgh.harvard.edu/pub/docs/motion_correction.pdf|Motion-compensated neuroanatomical imaging|&do=get]]'' ||''talk'' ||''Dylan Tisdall'' ||

||2:15 - 3:15 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/dmri,fs.ppt|Introduction to Diffusion MRI|&do=get]] ||talk ||Anastasia Yendiki ||

||3:30 - 4:15 ||[[FsTutorial/Diffusion|Diffusion Processing Tutorial]] ||tutorial ||staff ||

||2:20 - 2:45 ||'''break''' & [[https://spreadsheets.google.com/viewform?formkey=dGlVV3Bzb296bnBWN3lBc3l5U3lPUGc6MA|Evaluation]] || || ||

||4:15 - 4:45 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/tracula,fs.ppt|TRActs Constrained by UnderLying Anatomy (TRACULA)|&do=get]] ||talk ||Anastasia Yendiki ||

||4:45 - 5:30 ||[[FsTutorial/Tracula|Tracula Tutorial]] ||tutorial ||staff ||

||4:30 - 5:00 ||Question and Answer Session, FsQuiz ||talk ||staff ||
+||10:00 - 10:20 ||'''break''' || || ||

||10:20 - 11:40 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/fsfast.april2011.ppt|FSFAST|&do=get]] ||talk ||Doug Greve ||

||11:40 - 12:40 ||[[FsFastTutorialV5.1|FSFAST Tutorial]] ||tutorial ||staff ||

||12:40 - 1:40 ||'''Lunch''' ||-- ||-- ||

||''1:10 - 1:40'' ||''Optional Lunch Talk''- ''[[http://surfer.nmr.mgh.harvard.edu/pub/docs/motion_correction.pdf|Motion-compensated neuroanatomical imaging|&do=get]]'' ||''talk'' ||''Dylan Tisdall'' ||

||1:40 - 2:40 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/dmri,fs.ppt|Introduction to Diffusion MRI|&do=get]] ||talk ||Anastasia Yendiki ||

||2:40 - 3:25 ||[[FsTutorial/Diffusion|Diffusion Processing Tutorial]] ||tutorial ||staff ||

||3:25 - 3:45 ||'''break''' & [[https://spreadsheets.google.com/viewform?formkey=dGlVV3Bzb296bnBWN3lBc3l5U3lPUGc6MA|Evaluation]] || || ||

||3:45 - 4:15 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/tracula,fs.ppt|TRActs Constrained by UnderLying Anatomy (TRACULA)|&do=get]] ||talk ||Anastasia Yendiki ||

||4:15 - 5:00 ||[[FsTutorial/Tracula|Tracula Tutorial]] ||tutorial ||staff ||

||5:00 - 5:30 ||Question and Answer Session, FsQuiz ||talk ||staff ||

FreeSurfer Course, December 12-14, 2011

MGH, Charlestown Navy Yard, Building 149, Conference Room A

Monday, December 12th - Introduction / Single Subject / MRI / Longitudinal/ Troubleshooting

Tuesday, April 5th - Group Analysis/ ROIs / Registration / Diffusion

Wednesday, April 6th - Multi-Modal / Future Directions / fMRI / Q&A