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||''1:00 - 1:30'' ||''Optional Lunch Talk''- '' [[http://surfer.nmr.mgh.harvard.edu/pub/docs/mri_basics.pdf|A Non-physicist's Intro to MR|&do=get]] [[http://www.heartvista.com/SpinBench|SpinBench]]'' ||''talk'' ||''Dylan Tisdall'' ||
||1:30 - 2:15 || [[http://surfer.nmr.mgh.harvard.edu/pub/docs/fs.registration.ppt|Registration Methods|&do=get]] || talk || Lilla Zollei ||
||2:15- 2:55 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/freesurfer.failure_modes.ppt|Failure Modes|&do=get]] ||talk ||Bruce Fischl ||
||2:55 - 3:15 ||'''break''' || || ||
||3:15 - 3:35 ||Troubleshooting Demonstration || demo || Allison ||
||3:35 - 4:35 || [[FsTutorial/TroubleshootingData|Troubleshooting Tutorial]] ||tutorial ||staff ||
||4:35 - 5:30 || Quality Checking a Recon ||demo ||Allison Stevens ||
||5:30 - ||'''optional -''' [[DownloadAndInstall|FreeSurfer Installation on Personal Laptops]] ||one-on-one || staff ||
||5:30 - ||'''optional -''' [[http://surfer.nmr.mgh.harvard.edu/pub/docs/runningyourdata.ppt|Start Processing Your Own Data|&do=get]] ||one-on-one || staff ||
||''1:00 - 1:30'' ||''Optional Lunch Talk''- '' [[http://surfer.nmr.mgh.harvard.edu/pub/docs/mri_basics.pdf|A Non-physicist's Intro to MR|&do=get]] [[http://www.heartvista.com/SpinBench|SpinBench]]'' ||''talk'' ||''Dylan Tisdall'' || [[https://docs.google.com/spreadsheet/viewform?formkey=dGdoMmtpdjc1LXZiSm1JZWsySVBnZ2c6MA| Rate it!]]||
||1:30 - 2:15 || [[http://surfer.nmr.mgh.harvard.edu/pub/docs/fs.registration.ppt|Registration Methods|&do=get]] || talk || Lilla Zollei || [[https://docs.google.com/spreadsheet/viewform?formkey=dGQzdXhUSGt6N2FwWEIzYm04WkV1eEE6MA| Rate it!]]||
||2:15- 2:55 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/freesurfer.failure_modes.ppt|Failure Modes|&do=get]] ||talk ||Bruce Fischl || [[https://docs.google.com/spreadsheet/viewform?formkey=dEZNdUJSOEhEUE41ZS0wREhjSm02SkE6MA| Rate it!]]||
||2:55 - 3:15 ||'''break''' || || || ||
||3:15 - 3:35 ||Troubleshooting Demonstration || demo || Allison ||[[https://docs.google.com/spreadsheet/viewform?formkey=dFEzNk04U1lLSE1heno3bC1TNmpBRkE6MA| Rate it!]]||
||3:35 - 4:35 || [[FsTutorial/TroubleshootingData|Troubleshooting Tutorial]] ||tutorial ||staff || [[https://docs.google.com/spreadsheet/viewform?formkey=dGZtMXV2cWw1LUZ6WXVzazZkWl8zUGc6MA| Rate it!]]||
||4:35 - 5:30 || Quality Checking a Recon ||demo ||Allison Stevens || |Rate it!]]||
||5:30 - ||'''optional -''' [[DownloadAndInstall|FreeSurfer Installation on Personal Laptops]] ||one-on-one || staff || |Rate it!]]||
||5:30 - ||'''optional -''' [[http://surfer.nmr.mgh.harvard.edu/pub/docs/runningyourdata.ppt|Start Processing Your Own Data|&do=get]] ||one-on-one || staff || |Rate it!]]||
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||3:25 - 3:45 ||'''break''' & [[https://spreadsheets.google.com/viewform?formkey=dGlVV3Bzb296bnBWN3lBc3l5U3lPUGc6MA|Evaluation]] || || || ||3:25 - 3:45 ||'''break''' & Evaluation || || ||

FreeSurfer Course, December 12-14, 2011

MGH, Charlestown Navy Yard, Building 149, Conference Room A

Monday, December 12th - Introduction / Single Subject / Registration / Troubleshooting

Time

Title

Type

Lecturer

Give us your feedback

8:00 - 8:30

optional - Unix Tutorial for FreeSurfer Users online practice

tutorial

Allison Stevens

Rate it!

8:30 - 9:00

optional - Intro to FreeSurfer Jargon

talk

Allison Stevens

Rate it!

8:30 - 9:00

Course Registration

sign-in

staff

9:00 - 9:30

Introduction to Freesurfer

talk

Bruce Fischl

Rate it!

9:30 - 10:30

Analyzing the Individual Subject

talk

Doug Greve

Rate it!

10:30 - 10:50

break

10:50 - 11:20

Tkmedit/Tksurfer demonstration

demo

Doug Greve

Rate it!

11:20 - 11:50

Interaction with Individual Subject Data Tutorial

tutorial

staff

Rate it!

11:50 - 12:30

Surface-based Smoothing/Surface-based Registration

talk

Doug Greve

Rate it!

12:30 - 1:30

Lunch (Suggestions for where to eat)

--

--

1:00 - 1:30

Optional Lunch Talk- A Non-physicist's Intro to MR SpinBench

talk

Dylan Tisdall

Rate it!

1:30 - 2:15

Registration Methods

talk

Lilla Zollei

Rate it!

2:15- 2:55

Failure Modes

talk

Bruce Fischl

Rate it!

2:55 - 3:15

break

3:15 - 3:35

Troubleshooting Demonstration

demo

Allison

Rate it!

3:35 - 4:35

Troubleshooting Tutorial

tutorial

staff

Rate it!

4:35 - 5:30

Quality Checking a Recon

demo

Allison Stevens

|Rate it!]]

5:30 -

optional - FreeSurfer Installation on Personal Laptops

one-on-one

staff

|Rate it!]]

5:30 -

optional - Start Processing Your Own Data

one-on-one

staff

|Rate it!]]

Boston Beer Works location information here and here.
Meet us at 6:40pm at the front of Building 149 (the entrance on the opposite side of the building from where the Course is held).
If you miss us, we are taking the 6:45pm MGH/Navy Yard shuttle to North Station (the next few buses depart at 7pm, 7:15pm, and 7:45pm). From there, you cross the street and go down Canal Street. Boston Beer Works will be on your right.

Tuesday, December 13th - ROIs / Longitudinal / Multimodal / Group Analysis

Time

Title

Type

Lecturer

9:00 - 10:00

ROI Analysis

talk

Doug Greve

10:00 - 10:30

ROI Analysis Tutorial

tutorial

staff

10:30 - 10:50

break

10:50 - 11:20

Longitudinal FreeSurfer see also: LongitudinalProcessing

talk

Martin Reuter

11:20 - 12:10

Freeview Demo, Longitudinal Tutorial

tutorial

staff

12:10 - 1:10

Lunch

--

--

12:40 - 1:10

Optional Lunch Talk- MRI Acquisition Methods for Morphometry

talk

Andre van der Kouwe

1:10 - 1:40

Future Directions: Inferring architectonic boundaries from in-vivo MRI

talk

Bruce Fischl

1:40 - 2:40

Multi-Modal Integration

talk

Doug Greve

2:40 - 3:00

break

3:00 - 3:45

Multi-Modal Integration Tutorial

tutorial

staff

3:45 - 4:45

Group Analysis / GLM / Multiple Comparisons

talk

J. Eugenio Iglesias

4:45 - 5:15

QDEC demonstration

demo

Nick Schmansky

5:15 - 6:15

Group Analysis / Multiple Comparisons - mri_glmfit Tutorial

tutorial

staff

5:15 - 6:15

Group Analysis - qdec Tutorial

tutorial

staff

Wednesday, December 14th - fMRI / Diffusion / Q&A

9:00 - 10:00

Basics of fMRI Analysis

talk

Jon Polimeni

10:00 - 10:20

break

10:20 - 11:40

FSFAST

talk

Doug Greve

11:40 - 12:40

FSFAST Tutorial

tutorial

staff

12:40 - 1:40

Lunch

--

--

1:10 - 1:40

Optional Lunch Talk- Motion-compensated neuroanatomical imaging

talk

Dylan Tisdall

1:40 - 2:40

Introduction to Diffusion MRI

talk

Anastasia Yendiki

2:40 - 3:25

Diffusion Processing Tutorial

tutorial

staff

3:25 - 3:45

break & Evaluation

3:45 - 4:15

TRActs Constrained by UnderLying Anatomy (TRACULA)

talk

Anastasia Yendiki

4:15 - 5:00

Tracula Tutorial

tutorial

staff

5:00 - 5:30

Question and Answer Session, FsQuiz

talk

staff

FsTutorial/Dec2011CourseSchedule (last edited 2011-12-14 13:58:53 by NickSchmansky)